Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
PCDHGA1Q9Y5H4 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC24.96■■□□□ 1.59
PCDHGA1Q9Y5H4 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
PCDHGA1Q9Y5H4 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC24.95■■□□□ 1.58
PCDHGA1Q9Y5H4 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC24.95■■□□□ 1.58
PCDHGA1Q9Y5H4 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
PCDHGA1Q9Y5H4 CHST11-203ENST00000547956 936 ntTSL 2 BASIC24.95■■□□□ 1.58
PCDHGA1Q9Y5H4 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC24.95■■□□□ 1.58
PCDHGA1Q9Y5H4 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
PCDHGA1Q9Y5H4 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC24.94■■□□□ 1.58
PCDHGA1Q9Y5H4 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
PCDHGA1Q9Y5H4 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC24.93■■□□□ 1.58
PCDHGA1Q9Y5H4 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
PCDHGA1Q9Y5H4 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC24.92■■□□□ 1.58
PCDHGA1Q9Y5H4 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
PCDHGA1Q9Y5H4 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC24.91■■□□□ 1.58
PCDHGA1Q9Y5H4 AC148477.6-201ENST00000623746 465 ntBASIC24.91■■□□□ 1.58
PCDHGA1Q9Y5H4 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
PCDHGA1Q9Y5H4 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC24.9■■□□□ 1.58
PCDHGA1Q9Y5H4 AC135983.2-203ENST00000454486 1613 ntBASIC24.9■■□□□ 1.58
PCDHGA1Q9Y5H4 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
PCDHGA1Q9Y5H4 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC24.88■■□□□ 1.57
PCDHGA1Q9Y5H4 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
PCDHGA1Q9Y5H4 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC24.88■■□□□ 1.57
PCDHGA1Q9Y5H4 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC24.87■■□□□ 1.57
PCDHGA1Q9Y5H4 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
PCDHGA1Q9Y5H4 AC060814.1-201ENST00000554326 538 ntBASIC24.87■■□□□ 1.57
PCDHGA1Q9Y5H4 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC24.87■■□□□ 1.57
PCDHGA1Q9Y5H4 HYI-213ENST00000583037 1322 ntTSL 5 BASIC24.86■■□□□ 1.57
PCDHGA1Q9Y5H4 AC018358.1-201ENST00000631079 1402 ntBASIC24.86■■□□□ 1.57
PCDHGA1Q9Y5H4 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
PCDHGA1Q9Y5H4 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC24.86■■□□□ 1.57
PCDHGA1Q9Y5H4 AL033527.3-201ENST00000566366 1196 ntBASIC24.86■■□□□ 1.57
PCDHGA1Q9Y5H4 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
PCDHGA1Q9Y5H4 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC24.85■■□□□ 1.57
PCDHGA1Q9Y5H4 U85056.1-201ENST00000616429 682 ntBASIC24.85■■□□□ 1.57
PCDHGA1Q9Y5H4 WHAMMP2-203ENST00000563942 1603 ntBASIC24.85■■□□□ 1.57
PCDHGA1Q9Y5H4 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
PCDHGA1Q9Y5H4 AC127502.1-201ENST00000399971 1502 ntBASIC24.84■■□□□ 1.57
PCDHGA1Q9Y5H4 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC24.83■■□□□ 1.57
PCDHGA1Q9Y5H4 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC24.82■■□□□ 1.56
PCDHGA1Q9Y5H4 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC24.82■■□□□ 1.56
PCDHGA1Q9Y5H4 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC24.82■■□□□ 1.56
PCDHGA1Q9Y5H4 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
PCDHGA1Q9Y5H4 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC24.82■■□□□ 1.56
PCDHGA1Q9Y5H4 AC110285.7-201ENST00000624417 1536 ntBASIC24.81■■□□□ 1.56
PCDHGA1Q9Y5H4 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
PCDHGA1Q9Y5H4 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
PCDHGA1Q9Y5H4 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
PCDHGA1Q9Y5H4 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC24.8■■□□□ 1.56
PCDHGA1Q9Y5H4 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC24.8■■□□□ 1.56
PCDHGA1Q9Y5H4 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC24.8■■□□□ 1.56
PCDHGA1Q9Y5H4 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
PCDHGA1Q9Y5H4 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC24.79■■□□□ 1.56
PCDHGA1Q9Y5H4 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
PCDHGA1Q9Y5H4 RPS2-210ENST00000530225 765 ntTSL 2 BASIC24.79■■□□□ 1.56
PCDHGA1Q9Y5H4 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC24.79■■□□□ 1.56
PCDHGA1Q9Y5H4 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC24.78■■□□□ 1.56
PCDHGA1Q9Y5H4 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC24.78■■□□□ 1.56
PCDHGA1Q9Y5H4 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC24.78■■□□□ 1.56
PCDHGA1Q9Y5H4 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC24.78■■□□□ 1.56
PCDHGA1Q9Y5H4 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
PCDHGA1Q9Y5H4 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
PCDHGA1Q9Y5H4 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC24.78■■□□□ 1.56
PCDHGA1Q9Y5H4 TSPY13P-201ENST00000338964 914 ntBASIC24.77■■□□□ 1.56
PCDHGA1Q9Y5H4 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC24.76■■□□□ 1.55
PCDHGA1Q9Y5H4 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
PCDHGA1Q9Y5H4 AC092296.2-201ENST00000589470 999 ntBASIC24.75■■□□□ 1.55
PCDHGA1Q9Y5H4 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC24.75■■□□□ 1.55
PCDHGA1Q9Y5H4 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC24.74■■□□□ 1.55
PCDHGA1Q9Y5H4 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC24.74■■□□□ 1.55
PCDHGA1Q9Y5H4 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC24.74■■□□□ 1.55
PCDHGA1Q9Y5H4 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC24.74■■□□□ 1.55
PCDHGA1Q9Y5H4 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
PCDHGA1Q9Y5H4 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC24.74■■□□□ 1.55
PCDHGA1Q9Y5H4 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
PCDHGA1Q9Y5H4 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC24.74■■□□□ 1.55
PCDHGA1Q9Y5H4 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
PCDHGA1Q9Y5H4 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC24.72■■□□□ 1.55
PCDHGA1Q9Y5H4 ECEL1P2-201ENST00000461596 1295 ntBASIC24.72■■□□□ 1.55
PCDHGA1Q9Y5H4 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
PCDHGA1Q9Y5H4 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
PCDHGA1Q9Y5H4 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC24.72■■□□□ 1.55
PCDHGA1Q9Y5H4 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC24.71■■□□□ 1.55
PCDHGA1Q9Y5H4 MIR219A2-201ENST00000608502 1504 ntBASIC24.71■■□□□ 1.55
PCDHGA1Q9Y5H4 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
PCDHGA1Q9Y5H4 AC004987.1-201ENST00000428627 508 ntBASIC24.71■■□□□ 1.55
PCDHGA1Q9Y5H4 ATP5G2P3-201ENST00000429083 425 ntBASIC24.71■■□□□ 1.55
PCDHGA1Q9Y5H4 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
PCDHGA1Q9Y5H4 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
PCDHGA1Q9Y5H4 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC24.7■■□□□ 1.55
PCDHGA1Q9Y5H4 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
PCDHGA1Q9Y5H4 KRT18P60-201ENST00000312876 1297 ntBASIC24.7■■□□□ 1.54
PCDHGA1Q9Y5H4 GFER-205ENST00000569451 517 ntTSL 5 BASIC24.7■■□□□ 1.54
PCDHGA1Q9Y5H4 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC24.7■■□□□ 1.54
PCDHGA1Q9Y5H4 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
PCDHGA1Q9Y5H4 AC126177.7-201ENST00000547904 679 ntBASIC24.69■■□□□ 1.54
PCDHGA1Q9Y5H4 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC24.69■■□□□ 1.54
PCDHGA1Q9Y5H4 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
PCDHGA1Q9Y5H4 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC24.68■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms