Protein–RNA interactions for Protein: Q8WWV3

RTN4IP1, Reticulon-4-interacting protein 1, mitochondrial, humanhuman

Predicted RBP Predictions only

Length 396 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4IP1Q8WWV3 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC21.41■■□□□ 1.02
RTN4IP1Q8WWV3 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RTN4IP1Q8WWV3 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
RTN4IP1Q8WWV3 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RTN4IP1Q8WWV3 CHML-205ENST00000638160 705 ntTSL 3 BASIC21.4■■□□□ 1.02
RTN4IP1Q8WWV3 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
RTN4IP1Q8WWV3 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RTN4IP1Q8WWV3 HNRNPLP2-201ENST00000568980 1570 ntBASIC21.4■■□□□ 1.02
RTN4IP1Q8WWV3 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.02
RTN4IP1Q8WWV3 BX255925.1-201ENST00000566954 1854 ntBASIC21.39■■□□□ 1.02
RTN4IP1Q8WWV3 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC21.39■■□□□ 1.01
RTN4IP1Q8WWV3 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
RTN4IP1Q8WWV3 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
RTN4IP1Q8WWV3 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC21.39■■□□□ 1.01
RTN4IP1Q8WWV3 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
RTN4IP1Q8WWV3 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
RTN4IP1Q8WWV3 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC21.38■■□□□ 1.01
RTN4IP1Q8WWV3 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RTN4IP1Q8WWV3 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC21.37■■□□□ 1.01
RTN4IP1Q8WWV3 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RTN4IP1Q8WWV3 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RTN4IP1Q8WWV3 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RTN4IP1Q8WWV3 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RTN4IP1Q8WWV3 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC21.37■■□□□ 1.01
RTN4IP1Q8WWV3 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
RTN4IP1Q8WWV3 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
RTN4IP1Q8WWV3 SHF-207ENST00000560540 2062 ntTSL 5 BASIC21.35■■□□□ 1.01
RTN4IP1Q8WWV3 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC21.35■■□□□ 1.01
RTN4IP1Q8WWV3 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RTN4IP1Q8WWV3 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RTN4IP1Q8WWV3 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RTN4IP1Q8WWV3 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC21.34■■□□□ 1.01
RTN4IP1Q8WWV3 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
RTN4IP1Q8WWV3 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RTN4IP1Q8WWV3 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
RTN4IP1Q8WWV3 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
RTN4IP1Q8WWV3 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RTN4IP1Q8WWV3 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RTN4IP1Q8WWV3 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
RTN4IP1Q8WWV3 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
RTN4IP1Q8WWV3 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RTN4IP1Q8WWV3 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
RTN4IP1Q8WWV3 AC005559.1-201ENST00000589661 871 ntBASIC21.33■■□□□ 1.01
RTN4IP1Q8WWV3 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
RTN4IP1Q8WWV3 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC21.33■■□□□ 1
RTN4IP1Q8WWV3 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
RTN4IP1Q8WWV3 PROC-203ENST00000409048 1586 ntTSL 5 BASIC21.32■■□□□ 1
RTN4IP1Q8WWV3 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RTN4IP1Q8WWV3 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
RTN4IP1Q8WWV3 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
RTN4IP1Q8WWV3 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
RTN4IP1Q8WWV3 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC21.31■■□□□ 1
RTN4IP1Q8WWV3 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RTN4IP1Q8WWV3 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
RTN4IP1Q8WWV3 RPS2-209ENST00000529806 993 ntTSL 3 BASIC21.3■■□□□ 1
RTN4IP1Q8WWV3 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC21.3■■□□□ 1
RTN4IP1Q8WWV3 AP004833.2-201ENST00000532228 1454 ntBASIC21.3■■□□□ 1
RTN4IP1Q8WWV3 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RTN4IP1Q8WWV3 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RTN4IP1Q8WWV3 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC21.28■■□□□ 1
RTN4IP1Q8WWV3 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
RTN4IP1Q8WWV3 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
RTN4IP1Q8WWV3 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RTN4IP1Q8WWV3 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RTN4IP1Q8WWV3 SHF-208ENST00000560734 1731 ntTSL 3 BASIC21.28■■□□□ 1
RTN4IP1Q8WWV3 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC21.28■■□□□ 1
RTN4IP1Q8WWV3 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC21.28■■□□□ 1
RTN4IP1Q8WWV3 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
RTN4IP1Q8WWV3 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RTN4IP1Q8WWV3 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC21.27■■□□□ 1
RTN4IP1Q8WWV3 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RTN4IP1Q8WWV3 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RTN4IP1Q8WWV3 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RTN4IP1Q8WWV3 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RTN4IP1Q8WWV3 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
RTN4IP1Q8WWV3 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RTN4IP1Q8WWV3 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
RTN4IP1Q8WWV3 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC21.25■□□□□ 0.99
RTN4IP1Q8WWV3 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
RTN4IP1Q8WWV3 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC21.25■□□□□ 0.99
RTN4IP1Q8WWV3 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
RTN4IP1Q8WWV3 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC21.25■□□□□ 0.99
RTN4IP1Q8WWV3 AP006261.1-201ENST00000584783 668 ntBASIC21.25■□□□□ 0.99
RTN4IP1Q8WWV3 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
RTN4IP1Q8WWV3 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
RTN4IP1Q8WWV3 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC21.25■□□□□ 0.99
RTN4IP1Q8WWV3 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RTN4IP1Q8WWV3 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RTN4IP1Q8WWV3 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
RTN4IP1Q8WWV3 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
RTN4IP1Q8WWV3 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RTN4IP1Q8WWV3 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC21.24■□□□□ 0.99
RTN4IP1Q8WWV3 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC21.23■□□□□ 0.99
RTN4IP1Q8WWV3 MIR3665-201ENST00000578708 105 ntBASIC21.23■□□□□ 0.99
RTN4IP1Q8WWV3 DUX4L28-201ENST00000623687 678 ntBASIC21.23■□□□□ 0.99
RTN4IP1Q8WWV3 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
RTN4IP1Q8WWV3 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
RTN4IP1Q8WWV3 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
RTN4IP1Q8WWV3 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
RTN4IP1Q8WWV3 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 68.1 ms