Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AC131212.1-201ENST00000613771 668 ntBASIC31.27■■■□□ 2.6
SMC1BQ8NDV3 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC31.27■■■□□ 2.6
SMC1BQ8NDV3 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC31.27■■■□□ 2.6
SMC1BQ8NDV3 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
SMC1BQ8NDV3 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
SMC1BQ8NDV3 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC31.24■■■□□ 2.59
SMC1BQ8NDV3 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
SMC1BQ8NDV3 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
SMC1BQ8NDV3 CHST11-203ENST00000547956 936 ntTSL 2 BASIC31.24■■■□□ 2.59
SMC1BQ8NDV3 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
SMC1BQ8NDV3 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC31.24■■■□□ 2.59
SMC1BQ8NDV3 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
SMC1BQ8NDV3 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC31.24■■■□□ 2.59
SMC1BQ8NDV3 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
SMC1BQ8NDV3 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC31.21■■■□□ 2.59
SMC1BQ8NDV3 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC31.21■■■□□ 2.59
SMC1BQ8NDV3 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
SMC1BQ8NDV3 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
SMC1BQ8NDV3 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
SMC1BQ8NDV3 AC092296.2-201ENST00000589470 999 ntBASIC31.18■■■□□ 2.58
SMC1BQ8NDV3 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC31.17■■■□□ 2.58
SMC1BQ8NDV3 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC31.17■■■□□ 2.58
SMC1BQ8NDV3 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
SMC1BQ8NDV3 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC31.15■■■□□ 2.58
SMC1BQ8NDV3 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC31.15■■■□□ 2.58
SMC1BQ8NDV3 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
SMC1BQ8NDV3 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC31.14■■■□□ 2.58
SMC1BQ8NDV3 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
SMC1BQ8NDV3 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
SMC1BQ8NDV3 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC31.14■■■□□ 2.58
SMC1BQ8NDV3 AC129492.7-201ENST00000622992 756 ntBASIC31.14■■■□□ 2.58
SMC1BQ8NDV3 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
SMC1BQ8NDV3 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC31.13■■■□□ 2.57
SMC1BQ8NDV3 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC31.13■■■□□ 2.57
SMC1BQ8NDV3 DUX4L18-201ENST00000553347 1267 ntBASIC31.13■■■□□ 2.57
SMC1BQ8NDV3 ECEL1P2-201ENST00000461596 1295 ntBASIC31.12■■■□□ 2.57
SMC1BQ8NDV3 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC31.12■■■□□ 2.57
SMC1BQ8NDV3 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC31.11■■■□□ 2.57
SMC1BQ8NDV3 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC31.11■■■□□ 2.57
SMC1BQ8NDV3 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC31.11■■■□□ 2.57
SMC1BQ8NDV3 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC31.11■■■□□ 2.57
SMC1BQ8NDV3 THA1P-201ENST00000590384 1145 ntBASIC31.1■■■□□ 2.57
SMC1BQ8NDV3 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC31.1■■■□□ 2.57
SMC1BQ8NDV3 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
SMC1BQ8NDV3 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC31.08■■■□□ 2.57
SMC1BQ8NDV3 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC31.08■■■□□ 2.57
SMC1BQ8NDV3 AC148477.6-201ENST00000623746 465 ntBASIC31.07■■■□□ 2.56
SMC1BQ8NDV3 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
SMC1BQ8NDV3 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC31.06■■■□□ 2.56
SMC1BQ8NDV3 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC31.06■■■□□ 2.56
SMC1BQ8NDV3 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC31.06■■■□□ 2.56
SMC1BQ8NDV3 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC31.04■■■□□ 2.56
SMC1BQ8NDV3 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC31.03■■■□□ 2.56
SMC1BQ8NDV3 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
SMC1BQ8NDV3 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
SMC1BQ8NDV3 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
SMC1BQ8NDV3 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
SMC1BQ8NDV3 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
SMC1BQ8NDV3 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC31.02■■■□□ 2.56
SMC1BQ8NDV3 AC009299.2-201ENST00000482477 511 ntBASIC31.01■■■□□ 2.55
SMC1BQ8NDV3 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC31.01■■■□□ 2.55
SMC1BQ8NDV3 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
SMC1BQ8NDV3 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
SMC1BQ8NDV3 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC31■■■□□ 2.55
SMC1BQ8NDV3 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC30.99■■■□□ 2.55
SMC1BQ8NDV3 HES6-204ENST00000409182 863 ntTSL 2 BASIC30.99■■■□□ 2.55
SMC1BQ8NDV3 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC30.99■■■□□ 2.55
SMC1BQ8NDV3 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC30.99■■■□□ 2.55
SMC1BQ8NDV3 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC30.99■■■□□ 2.55
SMC1BQ8NDV3 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC30.99■■■□□ 2.55
SMC1BQ8NDV3 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC30.98■■■□□ 2.55
SMC1BQ8NDV3 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC30.97■■■□□ 2.55
SMC1BQ8NDV3 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC30.97■■■□□ 2.55
SMC1BQ8NDV3 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC30.97■■■□□ 2.55
SMC1BQ8NDV3 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC30.95■■■□□ 2.55
SMC1BQ8NDV3 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC30.93■■■□□ 2.54
SMC1BQ8NDV3 AL592293.1-201ENST00000502889 1188 ntBASIC30.93■■■□□ 2.54
SMC1BQ8NDV3 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
SMC1BQ8NDV3 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
SMC1BQ8NDV3 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
SMC1BQ8NDV3 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC30.92■■■□□ 2.54
SMC1BQ8NDV3 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC30.92■■■□□ 2.54
SMC1BQ8NDV3 GUSBP5-201ENST00000418136 578 ntBASIC30.92■■■□□ 2.54
SMC1BQ8NDV3 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC30.92■■■□□ 2.54
SMC1BQ8NDV3 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC30.92■■■□□ 2.54
SMC1BQ8NDV3 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC30.91■■■□□ 2.54
SMC1BQ8NDV3 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC30.91■■■□□ 2.54
SMC1BQ8NDV3 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC30.9■■■□□ 2.54
SMC1BQ8NDV3 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
SMC1BQ8NDV3 RP9P-202ENST00000450133 1212 ntBASIC30.9■■■□□ 2.54
SMC1BQ8NDV3 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
SMC1BQ8NDV3 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
SMC1BQ8NDV3 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
SMC1BQ8NDV3 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
SMC1BQ8NDV3 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC30.89■■■□□ 2.54
SMC1BQ8NDV3 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
SMC1BQ8NDV3 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC30.88■■■□□ 2.53
SMC1BQ8NDV3 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC30.88■■■□□ 2.53
SMC1BQ8NDV3 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
SMC1BQ8NDV3 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC30.87■■■□□ 2.53
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms