Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
VPS13CQ709C8 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
VPS13CQ709C8 AC060814.1-201ENST00000554326 538 ntBASIC21.81■■□□□ 1.08
VPS13CQ709C8 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC21.81■■□□□ 1.08
VPS13CQ709C8 U85056.1-201ENST00000616429 682 ntBASIC21.81■■□□□ 1.08
VPS13CQ709C8 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
VPS13CQ709C8 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VPS13CQ709C8 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC21.79■■□□□ 1.08
VPS13CQ709C8 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS13CQ709C8 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC21.78■■□□□ 1.08
VPS13CQ709C8 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VPS13CQ709C8 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
VPS13CQ709C8 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
VPS13CQ709C8 RARRES2P1-201ENST00000474487 481 ntBASIC21.77■■□□□ 1.08
VPS13CQ709C8 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS13CQ709C8 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS13CQ709C8 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC21.76■■□□□ 1.07
VPS13CQ709C8 AC004987.1-201ENST00000428627 508 ntBASIC21.76■■□□□ 1.07
VPS13CQ709C8 AL035685.1-201ENST00000636663 812 ntBASIC21.76■■□□□ 1.07
VPS13CQ709C8 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS13CQ709C8 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC21.75■■□□□ 1.07
VPS13CQ709C8 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC21.75■■□□□ 1.07
VPS13CQ709C8 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC21.75■■□□□ 1.07
VPS13CQ709C8 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
VPS13CQ709C8 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS13CQ709C8 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
VPS13CQ709C8 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
VPS13CQ709C8 AC120057.4-201ENST00000624722 1615 ntBASIC21.74■■□□□ 1.07
VPS13CQ709C8 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS13CQ709C8 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
VPS13CQ709C8 AL592295.1-201ENST00000400984 884 ntBASIC21.74■■□□□ 1.07
VPS13CQ709C8 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
VPS13CQ709C8 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC21.73■■□□□ 1.07
VPS13CQ709C8 KRT18P60-201ENST00000312876 1297 ntBASIC21.73■■□□□ 1.07
VPS13CQ709C8 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VPS13CQ709C8 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
VPS13CQ709C8 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC21.72■■□□□ 1.07
VPS13CQ709C8 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC21.71■■□□□ 1.07
VPS13CQ709C8 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC21.71■■□□□ 1.07
VPS13CQ709C8 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS13CQ709C8 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC21.7■■□□□ 1.06
VPS13CQ709C8 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS13CQ709C8 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS13CQ709C8 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC21.7■■□□□ 1.06
VPS13CQ709C8 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC21.7■■□□□ 1.06
VPS13CQ709C8 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
VPS13CQ709C8 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
VPS13CQ709C8 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC21.69■■□□□ 1.06
VPS13CQ709C8 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS13CQ709C8 AC092296.2-201ENST00000589470 999 ntBASIC21.69■■□□□ 1.06
VPS13CQ709C8 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS13CQ709C8 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC21.68■■□□□ 1.06
VPS13CQ709C8 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS13CQ709C8 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC21.68■■□□□ 1.06
VPS13CQ709C8 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS13CQ709C8 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS13CQ709C8 AL451085.2-201ENST00000605085 799 ntBASIC21.67■■□□□ 1.06
VPS13CQ709C8 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS13CQ709C8 WHAMMP2-203ENST00000563942 1603 ntBASIC21.66■■□□□ 1.06
VPS13CQ709C8 ATP5G2P3-201ENST00000429083 425 ntBASIC21.66■■□□□ 1.06
VPS13CQ709C8 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
VPS13CQ709C8 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS13CQ709C8 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC21.66■■□□□ 1.06
VPS13CQ709C8 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
VPS13CQ709C8 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VPS13CQ709C8 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
VPS13CQ709C8 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC21.64■■□□□ 1.05
VPS13CQ709C8 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
VPS13CQ709C8 MTURN-203ENST00000409688 843 ntTSL 2 BASIC21.64■■□□□ 1.05
VPS13CQ709C8 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21.64■■□□□ 1.05
VPS13CQ709C8 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC21.63■■□□□ 1.05
VPS13CQ709C8 GUK1-208ENST00000366728 842 ntTSL 2 BASIC21.63■■□□□ 1.05
VPS13CQ709C8 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC21.63■■□□□ 1.05
VPS13CQ709C8 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
VPS13CQ709C8 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
VPS13CQ709C8 HES4-202ENST00000428771 1040 ntTSL 2 BASIC21.62■■□□□ 1.05
VPS13CQ709C8 AC010864.1-201ENST00000609407 1511 ntBASIC21.61■■□□□ 1.05
VPS13CQ709C8 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS13CQ709C8 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
VPS13CQ709C8 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC21.61■■□□□ 1.05
VPS13CQ709C8 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
VPS13CQ709C8 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.61■■□□□ 1.05
VPS13CQ709C8 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS13CQ709C8 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS13CQ709C8 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS13CQ709C8 AC135983.2-203ENST00000454486 1613 ntBASIC21.6■■□□□ 1.05
VPS13CQ709C8 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
VPS13CQ709C8 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
VPS13CQ709C8 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC21.6■■□□□ 1.05
VPS13CQ709C8 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC21.59■■□□□ 1.05
VPS13CQ709C8 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
VPS13CQ709C8 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
VPS13CQ709C8 CHST11-203ENST00000547956 936 ntTSL 2 BASIC21.58■■□□□ 1.05
VPS13CQ709C8 TRIR-205ENST00000592273 783 ntTSL 3 BASIC21.58■■□□□ 1.04
VPS13CQ709C8 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC21.58■■□□□ 1.04
VPS13CQ709C8 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
VPS13CQ709C8 MIR219A2-201ENST00000608502 1504 ntBASIC21.58■■□□□ 1.04
VPS13CQ709C8 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC21.58■■□□□ 1.04
VPS13CQ709C8 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC21.58■■□□□ 1.04
VPS13CQ709C8 AC148477.6-201ENST00000623746 465 ntBASIC21.57■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms