Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
FOXA3P55318 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
FOXA3P55318 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
FOXA3P55318 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
FOXA3P55318 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
FOXA3P55318 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC19.13■□□□□ 0.65
FOXA3P55318 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
FOXA3P55318 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
FOXA3P55318 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
FOXA3P55318 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
FOXA3P55318 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC19.12■□□□□ 0.65
FOXA3P55318 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
FOXA3P55318 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
FOXA3P55318 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
FOXA3P55318 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
FOXA3P55318 AL449106.1-201ENST00000608517 1980 ntBASIC19.12■□□□□ 0.65
FOXA3P55318 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
FOXA3P55318 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
FOXA3P55318 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
FOXA3P55318 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
FOXA3P55318 AP004833.2-201ENST00000532228 1454 ntBASIC19.11■□□□□ 0.65
FOXA3P55318 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
FOXA3P55318 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
FOXA3P55318 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC19.1■□□□□ 0.65
FOXA3P55318 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC19.1■□□□□ 0.65
FOXA3P55318 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
FOXA3P55318 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
FOXA3P55318 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
FOXA3P55318 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC19.1■□□□□ 0.65
FOXA3P55318 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC19.1■□□□□ 0.65
FOXA3P55318 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
FOXA3P55318 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC19.09■□□□□ 0.65
FOXA3P55318 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC19.09■□□□□ 0.65
FOXA3P55318 AC010864.1-201ENST00000609407 1511 ntBASIC19.09■□□□□ 0.65
FOXA3P55318 LINC01003-201ENST00000564834 1764 ntBASIC19.09■□□□□ 0.65
FOXA3P55318 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
FOXA3P55318 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
FOXA3P55318 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
FOXA3P55318 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC19.08■□□□□ 0.65
FOXA3P55318 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
FOXA3P55318 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
FOXA3P55318 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC19.07■□□□□ 0.64
FOXA3P55318 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC19.07■□□□□ 0.64
FOXA3P55318 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
FOXA3P55318 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
FOXA3P55318 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
FOXA3P55318 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
FOXA3P55318 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
FOXA3P55318 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
FOXA3P55318 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
FOXA3P55318 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
FOXA3P55318 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
FOXA3P55318 DYNLL1-208ENST00000550178 581 ntBASIC19.06■□□□□ 0.64
FOXA3P55318 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC19.05■□□□□ 0.64
FOXA3P55318 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
FOXA3P55318 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
FOXA3P55318 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
FOXA3P55318 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
FOXA3P55318 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
FOXA3P55318 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
FOXA3P55318 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
FOXA3P55318 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
FOXA3P55318 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
FOXA3P55318 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
FOXA3P55318 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
FOXA3P55318 WASH5P-204ENST00000632292 975 ntBASIC19.02■□□□□ 0.64
FOXA3P55318 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC19.02■□□□□ 0.63
FOXA3P55318 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
FOXA3P55318 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC19.01■□□□□ 0.63
FOXA3P55318 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
FOXA3P55318 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
FOXA3P55318 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
FOXA3P55318 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
FOXA3P55318 PKM-203ENST00000389093 2279 ntTSL 5 BASIC18.99■□□□□ 0.63
FOXA3P55318 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
FOXA3P55318 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
FOXA3P55318 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
FOXA3P55318 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
FOXA3P55318 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
FOXA3P55318 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC18.98■□□□□ 0.63
FOXA3P55318 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
FOXA3P55318 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
FOXA3P55318 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC18.97■□□□□ 0.63
FOXA3P55318 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
FOXA3P55318 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC18.96■□□□□ 0.63
FOXA3P55318 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
FOXA3P55318 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
FOXA3P55318 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
FOXA3P55318 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
FOXA3P55318 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
FOXA3P55318 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
FOXA3P55318 AC091060.1-201ENST00000623524 1766 ntBASIC18.95■□□□□ 0.62
FOXA3P55318 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC18.94■□□□□ 0.62
FOXA3P55318 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
FOXA3P55318 AL031258.1-201ENST00000623562 325 ntBASIC18.94■□□□□ 0.62
FOXA3P55318 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
FOXA3P55318 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
FOXA3P55318 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC18.93■□□□□ 0.62
FOXA3P55318 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC18.93■□□□□ 0.62
FOXA3P55318 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms