Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC34.66■■■■□ 3.14
CSB-PGBD3P0DP91 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC34.65■■■■□ 3.14
CSB-PGBD3P0DP91 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC34.65■■■■□ 3.14
CSB-PGBD3P0DP91 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC34.64■■■■□ 3.14
CSB-PGBD3P0DP91 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC34.63■■■■□ 3.13
CSB-PGBD3P0DP91 AC127502.1-201ENST00000399971 1502 ntBASIC34.62■■■■□ 3.13
CSB-PGBD3P0DP91 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC34.61■■■■□ 3.13
CSB-PGBD3P0DP91 WHAMMP2-203ENST00000563942 1603 ntBASIC34.6■■■■□ 3.13
CSB-PGBD3P0DP91 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC34.6■■■■□ 3.13
CSB-PGBD3P0DP91 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC34.6■■■■□ 3.13
CSB-PGBD3P0DP91 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC34.59■■■■□ 3.13
CSB-PGBD3P0DP91 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC34.59■■■■□ 3.13
CSB-PGBD3P0DP91 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC34.58■■■■□ 3.13
CSB-PGBD3P0DP91 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC34.58■■■■□ 3.13
CSB-PGBD3P0DP91 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC34.57■■■■□ 3.12
CSB-PGBD3P0DP91 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC34.57■■■■□ 3.12
CSB-PGBD3P0DP91 AC135983.2-203ENST00000454486 1613 ntBASIC34.56■■■■□ 3.12
CSB-PGBD3P0DP91 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC34.56■■■■□ 3.12
CSB-PGBD3P0DP91 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC34.55■■■■□ 3.12
CSB-PGBD3P0DP91 CHST11-203ENST00000547956 936 ntTSL 2 BASIC34.55■■■■□ 3.12
CSB-PGBD3P0DP91 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC34.55■■■■□ 3.12
CSB-PGBD3P0DP91 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC34.54■■■■□ 3.12
CSB-PGBD3P0DP91 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC34.54■■■■□ 3.12
CSB-PGBD3P0DP91 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC34.53■■■■□ 3.12
CSB-PGBD3P0DP91 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC34.53■■■■□ 3.12
CSB-PGBD3P0DP91 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC34.53■■■■□ 3.12
CSB-PGBD3P0DP91 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC34.52■■■■□ 3.12
CSB-PGBD3P0DP91 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC34.52■■■■□ 3.12
CSB-PGBD3P0DP91 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC34.51■■■■□ 3.11
CSB-PGBD3P0DP91 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC34.51■■■■□ 3.11
CSB-PGBD3P0DP91 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC34.5■■■■□ 3.11
CSB-PGBD3P0DP91 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC34.5■■■■□ 3.11
CSB-PGBD3P0DP91 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC34.5■■■■□ 3.11
CSB-PGBD3P0DP91 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC34.5■■■■□ 3.11
CSB-PGBD3P0DP91 AC110285.7-201ENST00000624417 1536 ntBASIC34.49■■■■□ 3.11
CSB-PGBD3P0DP91 AL033527.3-201ENST00000566366 1196 ntBASIC34.48■■■■□ 3.11
CSB-PGBD3P0DP91 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC34.47■■■■□ 3.11
CSB-PGBD3P0DP91 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC34.47■■■■□ 3.11
CSB-PGBD3P0DP91 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC34.46■■■■□ 3.11
CSB-PGBD3P0DP91 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC34.45■■■■□ 3.11
CSB-PGBD3P0DP91 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC34.45■■■■□ 3.11
CSB-PGBD3P0DP91 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC34.44■■■■□ 3.1
CSB-PGBD3P0DP91 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC34.44■■■■□ 3.1
CSB-PGBD3P0DP91 U85056.1-201ENST00000616429 682 ntBASIC34.44■■■■□ 3.1
CSB-PGBD3P0DP91 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC34.44■■■■□ 3.1
CSB-PGBD3P0DP91 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC34.44■■■■□ 3.1
CSB-PGBD3P0DP91 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC34.43■■■■□ 3.1
CSB-PGBD3P0DP91 AC060814.1-201ENST00000554326 538 ntBASIC34.43■■■■□ 3.1
CSB-PGBD3P0DP91 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC34.43■■■■□ 3.1
CSB-PGBD3P0DP91 HYI-213ENST00000583037 1322 ntTSL 5 BASIC34.42■■■■□ 3.1
CSB-PGBD3P0DP91 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC34.42■■■■□ 3.1
CSB-PGBD3P0DP91 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC34.41■■■■□ 3.1
CSB-PGBD3P0DP91 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC34.4■■■■□ 3.1
CSB-PGBD3P0DP91 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC34.4■■■■□ 3.1
CSB-PGBD3P0DP91 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC34.39■■■■□ 3.1
CSB-PGBD3P0DP91 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC34.39■■■■□ 3.1
CSB-PGBD3P0DP91 AC148477.6-201ENST00000623746 465 ntBASIC34.39■■■■□ 3.1
CSB-PGBD3P0DP91 AC018358.1-201ENST00000631079 1402 ntBASIC34.38■■■■□ 3.09
CSB-PGBD3P0DP91 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC34.38■■■■□ 3.09
CSB-PGBD3P0DP91 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC34.38■■■■□ 3.09
CSB-PGBD3P0DP91 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC34.38■■■■□ 3.09
CSB-PGBD3P0DP91 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC34.37■■■■□ 3.09
CSB-PGBD3P0DP91 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC34.37■■■■□ 3.09
CSB-PGBD3P0DP91 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC34.37■■■■□ 3.09
CSB-PGBD3P0DP91 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC34.36■■■■□ 3.09
CSB-PGBD3P0DP91 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC34.36■■■■□ 3.09
CSB-PGBD3P0DP91 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC34.36■■■■□ 3.09
CSB-PGBD3P0DP91 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC34.36■■■■□ 3.09
CSB-PGBD3P0DP91 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC34.36■■■■□ 3.09
CSB-PGBD3P0DP91 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC34.34■■■■□ 3.09
CSB-PGBD3P0DP91 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC34.33■■■■□ 3.09
CSB-PGBD3P0DP91 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC34.33■■■■□ 3.09
CSB-PGBD3P0DP91 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC34.33■■■■□ 3.09
CSB-PGBD3P0DP91 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC34.32■■■■□ 3.09
CSB-PGBD3P0DP91 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC34.32■■■■□ 3.08
CSB-PGBD3P0DP91 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC34.31■■■■□ 3.08
CSB-PGBD3P0DP91 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC34.31■■■■□ 3.08
CSB-PGBD3P0DP91 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC34.31■■■■□ 3.08
CSB-PGBD3P0DP91 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC34.3■■■■□ 3.08
CSB-PGBD3P0DP91 MIR219A2-201ENST00000608502 1504 ntBASIC34.3■■■■□ 3.08
CSB-PGBD3P0DP91 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC34.28■■■■□ 3.08
CSB-PGBD3P0DP91 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC34.28■■■■□ 3.08
CSB-PGBD3P0DP91 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC34.27■■■■□ 3.08
CSB-PGBD3P0DP91 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC34.27■■■■□ 3.08
CSB-PGBD3P0DP91 RPS2-210ENST00000530225 765 ntTSL 2 BASIC34.27■■■■□ 3.08
CSB-PGBD3P0DP91 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC34.26■■■■□ 3.07
CSB-PGBD3P0DP91 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC34.25■■■■□ 3.07
CSB-PGBD3P0DP91 AL135925.1-201ENST00000605920 1701 ntBASIC34.24■■■■□ 3.07
CSB-PGBD3P0DP91 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC34.24■■■■□ 3.07
CSB-PGBD3P0DP91 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC34.23■■■■□ 3.07
CSB-PGBD3P0DP91 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC34.23■■■■□ 3.07
CSB-PGBD3P0DP91 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC34.23■■■■□ 3.07
CSB-PGBD3P0DP91 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC34.23■■■■□ 3.07
CSB-PGBD3P0DP91 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC34.23■■■■□ 3.07
CSB-PGBD3P0DP91 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC34.22■■■■□ 3.07
CSB-PGBD3P0DP91 GFER-205ENST00000569451 517 ntTSL 5 BASIC34.22■■■■□ 3.07
CSB-PGBD3P0DP91 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
CSB-PGBD3P0DP91 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
CSB-PGBD3P0DP91 KRT18P60-201ENST00000312876 1297 ntBASIC34.21■■■■□ 3.07
CSB-PGBD3P0DP91 TSPY13P-201ENST00000338964 914 ntBASIC34.21■■■■□ 3.07
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms