Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC20.65■□□□□ 0.9
COL6A5A8TX70 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL6A5A8TX70 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC20.65■□□□□ 0.9
COL6A5A8TX70 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
COL6A5A8TX70 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.89
COL6A5A8TX70 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL6A5A8TX70 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL6A5A8TX70 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.63■□□□□ 0.89
COL6A5A8TX70 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
COL6A5A8TX70 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL6A5A8TX70 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC20.63■□□□□ 0.89
COL6A5A8TX70 AC129492.7-201ENST00000622992 756 ntBASIC20.63■□□□□ 0.89
COL6A5A8TX70 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL6A5A8TX70 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
COL6A5A8TX70 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL6A5A8TX70 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL6A5A8TX70 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC20.62■□□□□ 0.89
COL6A5A8TX70 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC20.62■□□□□ 0.89
COL6A5A8TX70 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL6A5A8TX70 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL6A5A8TX70 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
COL6A5A8TX70 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL6A5A8TX70 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC20.59■□□□□ 0.89
COL6A5A8TX70 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL6A5A8TX70 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL6A5A8TX70 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC20.59■□□□□ 0.89
COL6A5A8TX70 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
COL6A5A8TX70 AL356441.2-201ENST00000443009 864 ntBASIC20.58■□□□□ 0.89
COL6A5A8TX70 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC20.58■□□□□ 0.88
COL6A5A8TX70 GUSBP5-201ENST00000418136 578 ntBASIC20.57■□□□□ 0.88
COL6A5A8TX70 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL6A5A8TX70 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC20.57■□□□□ 0.88
COL6A5A8TX70 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL6A5A8TX70 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.57■□□□□ 0.88
COL6A5A8TX70 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL6A5A8TX70 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL6A5A8TX70 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL6A5A8TX70 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL6A5A8TX70 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL6A5A8TX70 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL6A5A8TX70 AC025884.2-201ENST00000553429 711 ntBASIC20.56■□□□□ 0.88
COL6A5A8TX70 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A5A8TX70 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL6A5A8TX70 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL6A5A8TX70 LINC00273-201ENST00000539813 1452 ntBASIC20.54■□□□□ 0.88
COL6A5A8TX70 DUX4L18-201ENST00000553347 1267 ntBASIC20.54■□□□□ 0.88
COL6A5A8TX70 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC20.54■□□□□ 0.88
COL6A5A8TX70 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC20.54■□□□□ 0.88
COL6A5A8TX70 AC148477.6-201ENST00000623746 465 ntBASIC20.54■□□□□ 0.88
COL6A5A8TX70 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A5A8TX70 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A5A8TX70 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL6A5A8TX70 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC20.53■□□□□ 0.88
COL6A5A8TX70 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC20.52■□□□□ 0.88
COL6A5A8TX70 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
COL6A5A8TX70 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
COL6A5A8TX70 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC20.52■□□□□ 0.87
COL6A5A8TX70 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC20.52■□□□□ 0.87
COL6A5A8TX70 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
COL6A5A8TX70 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC20.51■□□□□ 0.87
COL6A5A8TX70 LSM7-203ENST00000585409 512 ntTSL 2 BASIC20.51■□□□□ 0.87
COL6A5A8TX70 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL6A5A8TX70 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL6A5A8TX70 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC20.5■□□□□ 0.87
COL6A5A8TX70 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL6A5A8TX70 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC20.49■□□□□ 0.87
COL6A5A8TX70 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL6A5A8TX70 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC20.49■□□□□ 0.87
COL6A5A8TX70 KRT8P33-201ENST00000508125 1423 ntBASIC20.49■□□□□ 0.87
COL6A5A8TX70 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
COL6A5A8TX70 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL6A5A8TX70 RP9P-202ENST00000450133 1212 ntBASIC20.48■□□□□ 0.87
COL6A5A8TX70 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC20.48■□□□□ 0.87
COL6A5A8TX70 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC20.48■□□□□ 0.87
COL6A5A8TX70 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
COL6A5A8TX70 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC20.48■□□□□ 0.87
COL6A5A8TX70 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC20.47■□□□□ 0.87
COL6A5A8TX70 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL6A5A8TX70 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
COL6A5A8TX70 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL6A5A8TX70 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC20.44■□□□□ 0.86
COL6A5A8TX70 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL6A5A8TX70 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
COL6A5A8TX70 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
COL6A5A8TX70 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC20.44■□□□□ 0.86
COL6A5A8TX70 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL6A5A8TX70 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
COL6A5A8TX70 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL6A5A8TX70 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC20.43■□□□□ 0.86
COL6A5A8TX70 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC20.42■□□□□ 0.86
COL6A5A8TX70 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL6A5A8TX70 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL6A5A8TX70 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC20.42■□□□□ 0.86
COL6A5A8TX70 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL6A5A8TX70 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
COL6A5A8TX70 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL6A5A8TX70 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
COL6A5A8TX70 ECEL1P2-201ENST00000461596 1295 ntBASIC20.41■□□□□ 0.86
COL6A5A8TX70 CHST11-203ENST00000547956 936 ntTSL 2 BASIC20.41■□□□□ 0.86
COL6A5A8TX70 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms