Protein–RNA interactions for Protein: Q9BRG1

VPS25, Vacuolar protein-sorting-associated protein 25, humanhuman

Predictions only

Length 176 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25Q9BRG1 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
VPS25Q9BRG1 MKRN4P-201ENST00000444706 1521 ntBASIC13.74□□□□□ -0.21
VPS25Q9BRG1 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
VPS25Q9BRG1 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS25Q9BRG1 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS25Q9BRG1 SIRPAP1-201ENST00000448467 1770 ntBASIC13.73□□□□□ -0.21
VPS25Q9BRG1 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC13.73□□□□□ -0.21
VPS25Q9BRG1 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC13.73□□□□□ -0.21
VPS25Q9BRG1 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC13.73□□□□□ -0.21
VPS25Q9BRG1 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS25Q9BRG1 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS25Q9BRG1 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS25Q9BRG1 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS25Q9BRG1 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
VPS25Q9BRG1 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
VPS25Q9BRG1 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
VPS25Q9BRG1 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC13.73□□□□□ -0.21
VPS25Q9BRG1 CHST11-202ENST00000546689 756 ntTSL 2 BASIC13.73□□□□□ -0.21
VPS25Q9BRG1 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS25Q9BRG1 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
VPS25Q9BRG1 CROCCP2-202ENST00000412962 2773 ntBASIC13.73□□□□□ -0.21
VPS25Q9BRG1 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
VPS25Q9BRG1 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
VPS25Q9BRG1 PALM-207ENST00000590161 2137 ntTSL 4 BASIC13.73□□□□□ -0.21
VPS25Q9BRG1 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS25Q9BRG1 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
VPS25Q9BRG1 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC13.73□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms