RNA–Protein interactions for RNA: ENST00000530339.1

PCDHA4-203, Transcript of protocadherin alpha 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA4, Length 5,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA4-203ENST00000530339 DCAF8L2P0C7V8 631 aa26.14■■□□□ 1.77
PCDHA4-203ENST00000530339 NISCHQ9Y2I1 1504 aa25.96■■□□□ 1.75
PCDHA4-203ENST00000530339 SUPT5HO00267 1087 aaKnown RBP25.25■■□□□ 1.63
PCDHA4-203ENST00000530339 SHROOM4Q9ULL8 1493 aa24.68■■□□□ 1.54
PCDHA4-203ENST00000530339 PELP1Q8IZL8 1130 aaKnown RBP24.35■■□□□ 1.49
PCDHA4-203ENST00000530339 EHMT2Q96KQ7 1210 aa24.16■■□□□ 1.46
PCDHA4-203ENST00000530339 PCGF6Q9BYE7 350 aa24.15■■□□□ 1.46
PCDHA4-203ENST00000530339 APLP2Q06481 763 aa23.99■■□□□ 1.43
PCDHA4-203ENST00000530339 FAM9AQ8IZU1 332 aaPredicted RBP23.98■■□□□ 1.43
PCDHA4-203ENST00000530339 ZEB1P37275 1124 aaPredicted RBP23.85■■□□□ 1.41
PCDHA4-203ENST00000530339 CENPBP07199 599 aaPredicted RBP23.77■■□□□ 1.4
PCDHA4-203ENST00000530339 CCER1Q8TC90 406 aaPredicted RBP23.48■■□□□ 1.35
PCDHA4-203ENST00000530339 MYT1Q01538 1121 aa23.48■■□□□ 1.35
PCDHA4-203ENST00000530339 TTBK1Q5TCY1 1321 aaPredicted RBP23.47■■□□□ 1.35
PCDHA4-203ENST00000530339 TRIM41Q8WV44 630 aa23.41■■□□□ 1.34
PCDHA4-203ENST00000530339 HRCP23327 699 aa23.32■■□□□ 1.32
PCDHA4-203ENST00000530339 ERICH6Q7L0X2 663 aa23.25■■□□□ 1.31
PCDHA4-203ENST00000530339 TRIM26Q12899 539 aaPredicted RBP23.17■■□□□ 1.3
PCDHA4-203ENST00000530339 YTHDC1Q96MU7 727 aaKnown RBP23.05■■□□□ 1.28
PCDHA4-203ENST00000530339 UBTFP17480 764 aaKnown RBP23■■□□□ 1.27
PCDHA4-203ENST00000530339 NEFLP07196 543 aa22.97■■□□□ 1.27
PCDHA4-203ENST00000530339 RANGAP1P46060 587 aaPredicted RBP22.97■■□□□ 1.27
PCDHA4-203ENST00000530339 CHIC1Q5VXU3 224 aa22.84■■□□□ 1.25
PCDHA4-203ENST00000530339 PPARGC1BQ86YN6 1023 aaKnown RBP22.82■■□□□ 1.24
PCDHA4-203ENST00000530339 ATP1B4Q9UN42 357 aaPredicted RBP22.77■■□□□ 1.24
PCDHA4-203ENST00000530339 LOC105371045A0A1W2PR82 267 aa22.72■■□□□ 1.23
PCDHA4-203ENST00000530339 DIEXFQ68CQ4 756 aaKnown RBP22.42■■□□□ 1.18
PCDHA4-203ENST00000530339 HNRNPUL2Q1KMD3 747 aaKnown RBP22.34■■□□□ 1.17
PCDHA4-203ENST00000530339 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.33■■□□□ 1.17
PCDHA4-203ENST00000530339 MYT1LQ9UL68 1186 aa22.29■■□□□ 1.16
PCDHA4-203ENST00000530339 ITGAEP38570 1179 aa22.24■■□□□ 1.15
PCDHA4-203ENST00000530339 GTF3C3Q9Y5Q9 886 aa22.15■■□□□ 1.14
PCDHA4-203ENST00000530339 DAXXQ9UER7 740 aaPredicted RBP22.14■■□□□ 1.13
PCDHA4-203ENST00000530339 POLR3GLQ9BT43 218 aa21.97■■□□□ 1.11
PCDHA4-203ENST00000530339 ACIN1Q9UKV3 1341 aaKnown RBP21.94■■□□□ 1.1
PCDHA4-203ENST00000530339 RTL5Q5HYW3 569 aaPredicted RBP21.93■■□□□ 1.1
PCDHA4-203ENST00000530339 ZNF316A6NFI3 1004 aaPredicted RBP21.88■■□□□ 1.09
PCDHA4-203ENST00000530339 ABCC9O60706 1549 aa21.8■■□□□ 1.08
PCDHA4-203ENST00000530339 CNGB1Q14028 1251 aaPredicted RBP21.79■■□□□ 1.08
PCDHA4-203ENST00000530339 BCANQ96GW7 911 aa21.77■■□□□ 1.08
PCDHA4-203ENST00000530339 FAM50AQ14320 339 aaKnown RBP21.69■■□□□ 1.06
PCDHA4-203ENST00000530339 ANP32CO43423 234 aa21.67■■□□□ 1.06
PCDHA4-203ENST00000530339 CDK11AQ9UQ88 783 aaPredicted RBP21.67■■□□□ 1.06
PCDHA4-203ENST00000530339 NEUROD1Q13562 356 aa21.64■■□□□ 1.05
PCDHA4-203ENST00000530339 DCAF1Q9Y4B6 1507 aa21.64■■□□□ 1.05
PCDHA4-203ENST00000530339 CLSPNQ9HAW4 1339 aa21.58■■□□□ 1.05
PCDHA4-203ENST00000530339 ZCCHC6Q5VYS8 1495 aaKnown RBP21.57■■□□□ 1.04
PCDHA4-203ENST00000530339 PABPN1Q86U42 306 aaKnown RBP eCLIP21.56■■□□□ 1.04
PCDHA4-203ENST00000530339 TRIM52Q96A61 297 aa21.56■■□□□ 1.04
PCDHA4-203ENST00000530339 CSRNP3Q8WYN3 585 aa21.52■■□□□ 1.04
PCDHA4-203ENST00000530339 SLC4A1APQ9BWU0 796 aaKnown RBP21.5■■□□□ 1.03
PCDHA4-203ENST00000530339 CCDC180Q9P1Z9 1646 aa21.46■■□□□ 1.03
PCDHA4-203ENST00000530339 SCAF1Q9H7N4 1312 aaKnown RBP21.37■■□□□ 1.01
PCDHA4-203ENST00000530339 FBLN2P98095 1184 aa21.31■■□□□ 1
PCDHA4-203ENST00000530339 ANP32AP39687 249 aaKnown RBP21.29■■□□□ 1
PCDHA4-203ENST00000530339 FKBP8Q14318 412 aa21.28■■□□□ 1
PCDHA4-203ENST00000530339 SCRIBQ14160 1630 aa21.26■□□□□ 0.99
PCDHA4-203ENST00000530339 ZNF326Q5BKZ1 582 aaKnown RBP21.23■□□□□ 0.99
PCDHA4-203ENST00000530339 ZBTB47Q9UFB7 747 aaPredicted RBP21.12■□□□□ 0.97
PCDHA4-203ENST00000530339 HNRNPUQ00839 825 aaKnown RBP eCLIP21.07■□□□□ 0.96
PCDHA4-203ENST00000530339 DDX10Q13206 875 aaKnown RBP21.07■□□□□ 0.96
PCDHA4-203ENST00000530339 ESF1Q9H501 851 aaKnown RBP21.07■□□□□ 0.96
PCDHA4-203ENST00000530339 MIER1Q8N108 512 aa21.07■□□□□ 0.96
PCDHA4-203ENST00000530339 TONSLQ96HA7 1378 aa21.05■□□□□ 0.96
PCDHA4-203ENST00000530339 EEA1Q15075 1411 aa21.05■□□□□ 0.96
PCDHA4-203ENST00000530339 NPM2Q86SE8 214 aaKnown RBP21.04■□□□□ 0.96
PCDHA4-203ENST00000530339 NEFMP07197 916 aa21.04■□□□□ 0.96
PCDHA4-203ENST00000530339 MYO15BQ96JP2 1530 aa21.03■□□□□ 0.96
PCDHA4-203ENST00000530339 CANXP27824 592 aaKnown RBP21.02■□□□□ 0.96
PCDHA4-203ENST00000530339 P3H3Q8IVL6 736 aa21■□□□□ 0.95
PCDHA4-203ENST00000530339 NPM1P06748 294 aaKnown RBP eCLIP20.98■□□□□ 0.95
PCDHA4-203ENST00000530339 RB1CC1Q8TDY2 1594 aa20.91■□□□□ 0.94
PCDHA4-203ENST00000530339 FAM9BQ8IZU0 186 aa20.9■□□□□ 0.94
PCDHA4-203ENST00000530339 EIF5BO60841 1220 aaKnown RBP20.9■□□□□ 0.94
PCDHA4-203ENST00000530339 CCDC136Q96JN2 1154 aa20.86■□□□□ 0.93
PCDHA4-203ENST00000530339 ZNF777Q9ULD5 760 aaPredicted RBP20.86■□□□□ 0.93
PCDHA4-203ENST00000530339 CLIP1P30622 1438 aa20.83■□□□□ 0.93
PCDHA4-203ENST00000530339 GOLGA3Q08378 1498 aa20.82■□□□□ 0.92
PCDHA4-203ENST00000530339 NBR1Q14596 966 aa20.81■□□□□ 0.92
PCDHA4-203ENST00000530339 NACADO15069 1562 aa20.81■□□□□ 0.92
PCDHA4-203ENST00000530339 SLC24A1O60721 1099 aa20.8■□□□□ 0.92
PCDHA4-203ENST00000530339 ANP32EQ9BTT0 268 aa20.77■□□□□ 0.92
PCDHA4-203ENST00000530339 RSF1Q96T23 1441 aaPredicted RBP20.77■□□□□ 0.92
PCDHA4-203ENST00000530339 ARID3CA6NKF2 412 aa20.76■□□□□ 0.91
PCDHA4-203ENST00000530339 STAG3Q9UJ98 1225 aa20.76■□□□□ 0.91
PCDHA4-203ENST00000530339 MRS2Q9HD23 443 aa20.75■□□□□ 0.91
PCDHA4-203ENST00000530339 UPF2Q9HAU5 1272 aaKnown RBP20.74■□□□□ 0.91
PCDHA4-203ENST00000530339 MTUS2Q5JR59 1369 aa20.73■□□□□ 0.91
PCDHA4-203ENST00000530339 ANP32BQ92688 251 aaKnown RBP20.73■□□□□ 0.91
PCDHA4-203ENST00000530339 TMC1Q8TDI8 760 aa20.73■□□□□ 0.91
PCDHA4-203ENST00000530339 BCL11AQ9H165 835 aa20.69■□□□□ 0.9
PCDHA4-203ENST00000530339 IRX6P78412 446 aaPredicted RBP20.69■□□□□ 0.9
PCDHA4-203ENST00000530339 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.69■□□□□ 0.9
PCDHA4-203ENST00000530339 GLIPR1L2Q4G1C9 344 aa20.68■□□□□ 0.9
PCDHA4-203ENST00000530339 CEP162Q5TB80 1403 aa20.67■□□□□ 0.9
PCDHA4-203ENST00000530339 TSPY4P0CV99 314 aa20.65■□□□□ 0.9
PCDHA4-203ENST00000530339 TSPY10P0CW01 314 aa20.65■□□□□ 0.9
PCDHA4-203ENST00000530339 TNIKQ9UKE5 1360 aa20.65■□□□□ 0.9
PCDHA4-203ENST00000530339 SALL2Q9Y467 1007 aaPredicted RBP20.65■□□□□ 0.9
PCDHA4-203ENST00000530339 HSP90AA1P07900 732 aaKnown RBP20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 218.2 ms