RNA–Protein interactions for RNA: ENST00000439984.7

PCNX1-202, Transcript of pecanex 1, humanhuman

TSL 1 (best) BASIC

Gene PCNX1, Length 6,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCNX1-202ENST00000439984 NISCHQ9Y2I1 1504 aa25■■□□□ 1.59
PCNX1-202ENST00000439984 DCAF8L2P0C7V8 631 aa23.87■■□□□ 1.41
PCNX1-202ENST00000439984 SUPT5HO00267 1087 aaKnown RBP23.79■■□□□ 1.4
PCNX1-202ENST00000439984 PELP1Q8IZL8 1130 aaKnown RBP23.71■■□□□ 1.39
PCNX1-202ENST00000439984 PCGF6Q9BYE7 350 aa23.44■■□□□ 1.34
PCNX1-202ENST00000439984 MYT1Q01538 1121 aa23.36■■□□□ 1.33
PCNX1-202ENST00000439984 EHMT2Q96KQ7 1210 aa23.23■■□□□ 1.31
PCNX1-202ENST00000439984 SHROOM4Q9ULL8 1493 aa23.21■■□□□ 1.31
PCNX1-202ENST00000439984 CENPBP07199 599 aaPredicted RBP23.01■■□□□ 1.27
PCNX1-202ENST00000439984 ERICH6Q7L0X2 663 aa22.79■■□□□ 1.24
PCNX1-202ENST00000439984 HRCP23327 699 aa22.7■■□□□ 1.22
PCNX1-202ENST00000439984 ZEB1P37275 1124 aaPredicted RBP22.67■■□□□ 1.22
PCNX1-202ENST00000439984 YTHDC1Q96MU7 727 aaKnown RBP22.66■■□□□ 1.22
PCNX1-202ENST00000439984 TTBK1Q5TCY1 1321 aaPredicted RBP22.61■■□□□ 1.21
PCNX1-202ENST00000439984 PPARGC1BQ86YN6 1023 aaKnown RBP22.52■■□□□ 1.2
PCNX1-202ENST00000439984 FAM9AQ8IZU1 332 aaPredicted RBP22.47■■□□□ 1.19
PCNX1-202ENST00000439984 CCER1Q8TC90 406 aaPredicted RBP22.47■■□□□ 1.19
PCNX1-202ENST00000439984 APLP2Q06481 763 aa22.12■■□□□ 1.13
PCNX1-202ENST00000439984 NEFLP07196 543 aa22.08■■□□□ 1.13
PCNX1-202ENST00000439984 TRIM26Q12899 539 aaPredicted RBP22.05■■□□□ 1.12
PCNX1-202ENST00000439984 GTF3C3Q9Y5Q9 886 aa21.88■■□□□ 1.09
PCNX1-202ENST00000439984 TRIM41Q8WV44 630 aa21.76■■□□□ 1.07
PCNX1-202ENST00000439984 RANGAP1P46060 587 aaPredicted RBP21.71■■□□□ 1.07
PCNX1-202ENST00000439984 LOC105371045A0A1W2PR82 267 aa21.69■■□□□ 1.06
PCNX1-202ENST00000439984 DIEXFQ68CQ4 756 aaKnown RBP21.68■■□□□ 1.06
PCNX1-202ENST00000439984 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.51■■□□□ 1.03
PCNX1-202ENST00000439984 ACIN1Q9UKV3 1341 aaKnown RBP21.5■■□□□ 1.03
PCNX1-202ENST00000439984 BCANQ96GW7 911 aa21.45■■□□□ 1.02
PCNX1-202ENST00000439984 CHIC1Q5VXU3 224 aa21.43■■□□□ 1.02
PCNX1-202ENST00000439984 RTL5Q5HYW3 569 aaPredicted RBP21.4■■□□□ 1.02
PCNX1-202ENST00000439984 UBTFP17480 764 aaKnown RBP21.39■■□□□ 1.01
PCNX1-202ENST00000439984 SCAF1Q9H7N4 1312 aaKnown RBP21.35■■□□□ 1.01
PCNX1-202ENST00000439984 DAXXQ9UER7 740 aaPredicted RBP21.34■■□□□ 1.01
PCNX1-202ENST00000439984 HNRNPUL2Q1KMD3 747 aaKnown RBP21.22■□□□□ 0.99
PCNX1-202ENST00000439984 ATP1B4Q9UN42 357 aaPredicted RBP21.18■□□□□ 0.98
PCNX1-202ENST00000439984 NEUROD1Q13562 356 aa21.11■□□□□ 0.97
PCNX1-202ENST00000439984 ITGAEP38570 1179 aa21.05■□□□□ 0.96
PCNX1-202ENST00000439984 CNGB1Q14028 1251 aaPredicted RBP21.05■□□□□ 0.96
PCNX1-202ENST00000439984 EIF5BO60841 1220 aaKnown RBP20.99■□□□□ 0.95
PCNX1-202ENST00000439984 ZNF316A6NFI3 1004 aaPredicted RBP20.97■□□□□ 0.95
PCNX1-202ENST00000439984 CDK11AQ9UQ88 783 aaPredicted RBP20.96■□□□□ 0.95
PCNX1-202ENST00000439984 POLR3GLQ9BT43 218 aa20.94■□□□□ 0.94
PCNX1-202ENST00000439984 ZCCHC6Q5VYS8 1495 aaKnown RBP20.87■□□□□ 0.93
PCNX1-202ENST00000439984 ABCC9O60706 1549 aa20.83■□□□□ 0.92
PCNX1-202ENST00000439984 FKBP8Q14318 412 aa20.72■□□□□ 0.91
PCNX1-202ENST00000439984 CLSPNQ9HAW4 1339 aa20.7■□□□□ 0.9
PCNX1-202ENST00000439984 BCL11AQ9H165 835 aa20.67■□□□□ 0.9
PCNX1-202ENST00000439984 NBR1Q14596 966 aa20.66■□□□□ 0.9
PCNX1-202ENST00000439984 ANP32EQ9BTT0 268 aa20.65■□□□□ 0.9
PCNX1-202ENST00000439984 CCDC180Q9P1Z9 1646 aa20.64■□□□□ 0.89
PCNX1-202ENST00000439984 ANP32AP39687 249 aaKnown RBP20.59■□□□□ 0.89
PCNX1-202ENST00000439984 NPM2Q86SE8 214 aaKnown RBP20.59■□□□□ 0.89
PCNX1-202ENST00000439984 ANP32CO43423 234 aa20.57■□□□□ 0.88
PCNX1-202ENST00000439984 PABPN1Q86U42 306 aaKnown RBP eCLIP20.5■□□□□ 0.87
PCNX1-202ENST00000439984 GLIPR1L2Q4G1C9 344 aa20.47■□□□□ 0.87
PCNX1-202ENST00000439984 MYT1LQ9UL68 1186 aa20.46■□□□□ 0.87
PCNX1-202ENST00000439984 SCRIBQ14160 1630 aa20.43■□□□□ 0.86
PCNX1-202ENST00000439984 MIER1Q8N108 512 aa20.43■□□□□ 0.86
PCNX1-202ENST00000439984 DCAF1Q9Y4B6 1507 aa20.35■□□□□ 0.85
PCNX1-202ENST00000439984 RTN4Q9NQC3 1192 aaKnown RBP20.3■□□□□ 0.84
PCNX1-202ENST00000439984 MYO15BQ96JP2 1530 aa20.28■□□□□ 0.84
PCNX1-202ENST00000439984 FAM50AQ14320 339 aaKnown RBP20.27■□□□□ 0.84
PCNX1-202ENST00000439984 ZBTB47Q9UFB7 747 aaPredicted RBP20.26■□□□□ 0.83
PCNX1-202ENST00000439984 TRIM52Q96A61 297 aa20.25■□□□□ 0.83
PCNX1-202ENST00000439984 IRX6P78412 446 aaPredicted RBP20.25■□□□□ 0.83
PCNX1-202ENST00000439984 ARXQ96QS3 562 aa20.21■□□□□ 0.83
PCNX1-202ENST00000439984 HNRNPUQ00839 825 aaKnown RBP eCLIP20.19■□□□□ 0.82
PCNX1-202ENST00000439984 DDX10Q13206 875 aaKnown RBP20.15■□□□□ 0.82
PCNX1-202ENST00000439984 CSRNP3Q8WYN3 585 aa20.11■□□□□ 0.81
PCNX1-202ENST00000439984 SUPT16HQ9Y5B9 1047 aaKnown RBP20.08■□□□□ 0.8
PCNX1-202ENST00000439984 SLC4A1APQ9BWU0 796 aaKnown RBP20.05■□□□□ 0.8
PCNX1-202ENST00000439984 ZNF326Q5BKZ1 582 aaKnown RBP20.03■□□□□ 0.8
PCNX1-202ENST00000439984 CCDC136Q96JN2 1154 aa20.03■□□□□ 0.8
PCNX1-202ENST00000439984 RSF1Q96T23 1441 aaPredicted RBP20.02■□□□□ 0.8
PCNX1-202ENST00000439984 FAM9BQ8IZU0 186 aa20.02■□□□□ 0.79
PCNX1-202ENST00000439984 DEKP35659 375 aaKnown RBP19.99■□□□□ 0.79
PCNX1-202ENST00000439984 ANP32BQ92688 251 aaKnown RBP19.95■□□□□ 0.78
PCNX1-202ENST00000439984 CANXP27824 592 aaKnown RBP19.94■□□□□ 0.78
PCNX1-202ENST00000439984 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.92■□□□□ 0.78
PCNX1-202ENST00000439984 NEFMP07197 916 aa19.88■□□□□ 0.77
PCNX1-202ENST00000439984 SALL2Q9Y467 1007 aaPredicted RBP19.86■□□□□ 0.77
PCNX1-202ENST00000439984 RBM19Q9Y4C8 960 aaKnown RBP19.85■□□□□ 0.77
PCNX1-202ENST00000439984 HIRIP3Q9BW71 556 aaPredicted RBP19.85■□□□□ 0.77
PCNX1-202ENST00000439984 LAS1LQ9Y4W2 734 aaKnown RBP19.85■□□□□ 0.77
PCNX1-202ENST00000439984 NOP58Q9Y2X3 529 aaKnown RBP19.82■□□□□ 0.76
PCNX1-202ENST00000439984 TSHZ2Q9NRE2 1034 aa19.8■□□□□ 0.76
PCNX1-202ENST00000439984 NAP1L5Q96NT1 182 aaPredicted RBP19.79■□□□□ 0.76
PCNX1-202ENST00000439984 HSP90AA1P07900 732 aaKnown RBP19.78■□□□□ 0.76
PCNX1-202ENST00000439984 UPF2Q9HAU5 1272 aaKnown RBP19.72■□□□□ 0.75
PCNX1-202ENST00000439984 NACADO15069 1562 aa19.72■□□□□ 0.75
PCNX1-202ENST00000439984 RB1CC1Q8TDY2 1594 aa19.71■□□□□ 0.75
PCNX1-202ENST00000439984 ERICH6BQ5W0A0 696 aa19.7■□□□□ 0.74
PCNX1-202ENST00000439984 CECR2Q9BXF3 1484 aa19.7■□□□□ 0.74
PCNX1-202ENST00000439984 MRS2Q9HD23 443 aa19.69■□□□□ 0.74
PCNX1-202ENST00000439984 SENP3-EIF4A1A0A087X0R7 540 aa19.67■□□□□ 0.74
PCNX1-202ENST00000439984 TONSLQ96HA7 1378 aa19.66■□□□□ 0.74
PCNX1-202ENST00000439984 TRIM44Q96DX7 344 aaPredicted RBP19.65■□□□□ 0.74
PCNX1-202ENST00000439984 DDRGK1Q96HY6 314 aa19.64■□□□□ 0.73
PCNX1-202ENST00000439984 PPM1GO15355 546 aaPredicted RBP19.62■□□□□ 0.73
PCNX1-202ENST00000439984 P3H3Q8IVL6 736 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms