Protein–RNA interactions for Protein: Q9BRG1

VPS25, Vacuolar protein-sorting-associated protein 25, humanhuman

Predictions only

Length 176 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25Q9BRG1 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
VPS25Q9BRG1 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
VPS25Q9BRG1 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
VPS25Q9BRG1 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
VPS25Q9BRG1 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC13.78□□□□□ -0.2
VPS25Q9BRG1 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC13.78□□□□□ -0.2
VPS25Q9BRG1 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
VPS25Q9BRG1 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC13.78□□□□□ -0.2
VPS25Q9BRG1 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
VPS25Q9BRG1 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
VPS25Q9BRG1 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
VPS25Q9BRG1 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
VPS25Q9BRG1 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
VPS25Q9BRG1 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
VPS25Q9BRG1 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC13.78□□□□□ -0.2
VPS25Q9BRG1 DUX4L28-201ENST00000623687 678 ntBASIC13.78□□□□□ -0.2
VPS25Q9BRG1 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
VPS25Q9BRG1 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC13.78□□□□□ -0.2
VPS25Q9BRG1 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
VPS25Q9BRG1 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
VPS25Q9BRG1 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
VPS25Q9BRG1 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
VPS25Q9BRG1 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
VPS25Q9BRG1 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC13.78□□□□□ -0.2
VPS25Q9BRG1 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC13.78□□□□□ -0.2
VPS25Q9BRG1 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
VPS25Q9BRG1 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
VPS25Q9BRG1 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
VPS25Q9BRG1 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC13.77□□□□□ -0.2
VPS25Q9BRG1 AL662844.4-201ENST00000606367 2838 ntBASIC13.77□□□□□ -0.2
VPS25Q9BRG1 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
VPS25Q9BRG1 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
VPS25Q9BRG1 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
VPS25Q9BRG1 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
VPS25Q9BRG1 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
VPS25Q9BRG1 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
VPS25Q9BRG1 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.2
VPS25Q9BRG1 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.2
VPS25Q9BRG1 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
VPS25Q9BRG1 AC135776.1-201ENST00000319817 2481 ntBASIC13.77□□□□□ -0.21
VPS25Q9BRG1 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
VPS25Q9BRG1 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC13.77□□□□□ -0.21
VPS25Q9BRG1 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC13.77□□□□□ -0.21
VPS25Q9BRG1 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
VPS25Q9BRG1 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC13.77□□□□□ -0.21
VPS25Q9BRG1 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
VPS25Q9BRG1 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC13.77□□□□□ -0.21
VPS25Q9BRG1 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
VPS25Q9BRG1 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
VPS25Q9BRG1 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
VPS25Q9BRG1 HYMAI-201ENST00000635591 3347 ntBASIC13.77□□□□□ -0.21
VPS25Q9BRG1 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
VPS25Q9BRG1 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC13.77□□□□□ -0.21
VPS25Q9BRG1 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
VPS25Q9BRG1 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC13.77□□□□□ -0.21
VPS25Q9BRG1 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC13.76□□□□□ -0.21
VPS25Q9BRG1 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms