RNA–Protein interactions for RNA: ENST00000605424.5

MMP28-201, Transcript of matrix metallopeptidase 28, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MMP28, Length 1,928 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-201ENST00000605424 NISCHQ9Y2I1 1504 aa43.18■■■■■ 4.5
MMP28-201ENST00000605424 CCDC180Q9P1Z9 1646 aa37.3■■■■□ 3.56
MMP28-201ENST00000605424 ZCCHC6Q5VYS8 1495 aaKnown RBP36.42■■■■□ 3.42
MMP28-201ENST00000605424 ABCC9O60706 1549 aa35.79■■■■□ 3.32
MMP28-201ENST00000605424 DCAF1Q9Y4B6 1507 aa35.75■■■■□ 3.31
MMP28-201ENST00000605424 SHROOM4Q9ULL8 1493 aa35.69■■■■□ 3.3
MMP28-201ENST00000605424 DCAF8L2P0C7V8 631 aa35.41■■■■□ 3.26
MMP28-201ENST00000605424 MYO15BQ96JP2 1530 aa35.05■■■■□ 3.2
MMP28-201ENST00000605424 SUPT5HO00267 1087 aaKnown RBP34.75■■■■□ 3.15
MMP28-201ENST00000605424 NACADO15069 1562 aa34.66■■■■□ 3.14
MMP28-201ENST00000605424 RB1CC1Q8TDY2 1594 aa34.54■■■■□ 3.12
MMP28-201ENST00000605424 SCRIBQ14160 1630 aa34.36■■■■□ 3.09
MMP28-201ENST00000605424 UNC13AQ9UPW8 1703 aa33.92■■■■□ 3.02
MMP28-201ENST00000605424 RSF1Q96T23 1441 aaPredicted RBP33.79■■■■□ 3
MMP28-201ENST00000605424 CHIC1Q5VXU3 224 aa33.68■■■□□ 2.98
MMP28-201ENST00000605424 PABPN1Q86U42 306 aaKnown RBP eCLIP33.66■■■□□ 2.98
MMP28-201ENST00000605424 BICRAQ9NZM4 1560 aa33.65■■■□□ 2.98
MMP28-201ENST00000605424 CECR2Q9BXF3 1484 aa33.46■■■□□ 2.95
MMP28-201ENST00000605424 MROH2BQ7Z745 1585 aa33.37■■■□□ 2.93
MMP28-201ENST00000605424 BAZ1AQ9NRL2 1556 aaPredicted RBP33.29■■■□□ 2.92
MMP28-201ENST00000605424 WIZO95785 1651 aa33.12■■■□□ 2.89
MMP28-201ENST00000605424 SMARCA4P51532 1647 aa33.02■■■□□ 2.88
MMP28-201ENST00000605424 TOP2AP11388 1531 aaKnown RBP32.82■■■□□ 2.84
MMP28-201ENST00000605424 TRIM41Q8WV44 630 aa32.65■■■□□ 2.82
MMP28-201ENST00000605424 EIF4G1Q04637 1599 aaKnown RBP32.63■■■□□ 2.81
MMP28-201ENST00000605424 PEG3Q9GZU2 1588 aa32.62■■■□□ 2.81
MMP28-201ENST00000605424 SMARCA2P51531 1590 aa32.53■■■□□ 2.8
MMP28-201ENST00000605424 CCDC88BA6NC98 1476 aa32.5■■■□□ 2.79
MMP28-201ENST00000605424 LOC105371045A0A1W2PR82 267 aa32.39■■■□□ 2.78
MMP28-201ENST00000605424 DNAJC5BQ9UF47 199 aa32.39■■■□□ 2.78
MMP28-201ENST00000605424 CC2D2AQ9P2K1 1620 aa32.34■■■□□ 2.77
MMP28-201ENST00000605424 ATAD2BQ9ULI0 1458 aa32.31■■■□□ 2.76
MMP28-201ENST00000605424 BAZ1BQ9UIG0 1483 aaKnown RBP32.16■■■□□ 2.74
MMP28-201ENST00000605424 NCAPD3P42695 1498 aa32.05■■■□□ 2.72
MMP28-201ENST00000605424 FAM9AQ8IZU1 332 aaPredicted RBP32.02■■■□□ 2.72
MMP28-201ENST00000605424 ABCC8Q09428 1581 aa32.02■■■□□ 2.72
MMP28-201ENST00000605424 HMGXB3Q12766 1538 aa31.93■■■□□ 2.7
MMP28-201ENST00000605424 WRNQ14191 1432 aaPredicted RBP eCLIP31.78■■■□□ 2.68
MMP28-201ENST00000605424 EEA1Q15075 1411 aa31.77■■■□□ 2.68
MMP28-201ENST00000605424 PCGF6Q9BYE7 350 aa31.71■■■□□ 2.67
MMP28-201ENST00000605424 SOGA1O94964 1423 aa31.6■■■□□ 2.65
MMP28-201ENST00000605424 SYNJ1O43426 1573 aa31.58■■■□□ 2.65
MMP28-201ENST00000605424 TRIM26Q12899 539 aaPredicted RBP31.58■■■□□ 2.65
MMP28-201ENST00000605424 CSRNP3Q8WYN3 585 aa31.5■■■□□ 2.63
MMP28-201ENST00000605424 EHMT2Q96KQ7 1210 aa31.49■■■□□ 2.63
MMP28-201ENST00000605424 HRCP23327 699 aa31.43■■■□□ 2.62
MMP28-201ENST00000605424 TOP2BQ02880 1626 aa31.43■■■□□ 2.62
MMP28-201ENST00000605424 CFTRP13569 1480 aa31.42■■■□□ 2.62
MMP28-201ENST00000605424 RUSC2Q8N2Y8 1516 aa31.42■■■□□ 2.62
MMP28-201ENST00000605424 TNIKQ9UKE5 1360 aa31.39■■■□□ 2.62
MMP28-201ENST00000605424 BIVM-ERCC5R4GMW8 1640 aa31.38■■■□□ 2.61
MMP28-201ENST00000605424 GOLGA3Q08378 1498 aa31.32■■■□□ 2.6
MMP28-201ENST00000605424 PRDM2Q13029 1718 aa31.27■■■□□ 2.6
MMP28-201ENST00000605424 KIF21BO75037 1637 aa31.26■■■□□ 2.6
MMP28-201ENST00000605424 CEP164Q9UPV0 1460 aa31.25■■■□□ 2.59
MMP28-201ENST00000605424 NESP48681 1621 aa31.24■■■□□ 2.59
MMP28-201ENST00000605424 CEP162Q5TB80 1403 aa31.24■■■□□ 2.59
MMP28-201ENST00000605424 CADPSQ9ULU8 1353 aa31.18■■■□□ 2.58
MMP28-201ENST00000605424 CUX1P39880 1505 aa31.15■■■□□ 2.58
MMP28-201ENST00000605424 UBTFP17480 764 aaKnown RBP31.14■■■□□ 2.58
MMP28-201ENST00000605424 LAMC3Q9Y6N6 1575 aa31.03■■■□□ 2.56
MMP28-201ENST00000605424 ERICH3Q5RHP9 1530 aa30.94■■■□□ 2.54
MMP28-201ENST00000605424 KIF27Q86VH2 1401 aa30.93■■■□□ 2.54
MMP28-201ENST00000605424 RAPGEF2Q9Y4G8 1499 aa30.93■■■□□ 2.54
MMP28-201ENST00000605424 PRXQ9BXM0 1461 aa30.9■■■□□ 2.54
MMP28-201ENST00000605424 CLIP1P30622 1438 aa30.83■■■□□ 2.53
MMP28-201ENST00000605424 FANCD2Q9BXW9 1451 aa30.83■■■□□ 2.53
MMP28-201ENST00000605424 PDS5BQ9NTI5 1447 aa30.8■■■□□ 2.52
MMP28-201ENST00000605424 KIF21AQ7Z4S6 1674 aa30.78■■■□□ 2.52
MMP28-201ENST00000605424 ZEB1P37275 1124 aaPredicted RBP30.75■■■□□ 2.51
MMP28-201ENST00000605424 PPARGC1BQ86YN6 1023 aaKnown RBP30.75■■■□□ 2.51
MMP28-201ENST00000605424 FGD5Q6ZNL6 1462 aa30.7■■■□□ 2.5
MMP28-201ENST00000605424 VPS8Q8N3P4 1428 aa30.69■■■□□ 2.5
MMP28-201ENST00000605424 ERCC6Q03468 1493 aa30.66■■■□□ 2.5
MMP28-201ENST00000605424 DNMBPQ6XZF7 1577 aa30.66■■■□□ 2.5
MMP28-201ENST00000605424 CUX2O14529 1486 aa30.65■■■□□ 2.5
MMP28-201ENST00000605424 IGF1RP08069 1367 aa30.57■■■□□ 2.48
MMP28-201ENST00000605424 TOPBP1Q92547 1522 aa30.55■■■□□ 2.48
MMP28-201ENST00000605424 URB2Q14146 1524 aaKnown RBP30.54■■■□□ 2.48
MMP28-201ENST00000605424 MRC2Q9UBG0 1479 aa30.49■■■□□ 2.47
MMP28-201ENST00000605424 ABCA10Q8WWZ4 1543 aa30.47■■■□□ 2.47
MMP28-201ENST00000605424 THOC2Q8NI27 1593 aaKnown RBP30.47■■■□□ 2.47
MMP28-201ENST00000605424 POLA1P09884 1462 aaPredicted RBP30.45■■■□□ 2.47
MMP28-201ENST00000605424 APLP2Q06481 763 aa30.44■■■□□ 2.46
MMP28-201ENST00000605424 CARMIL1Q5VZK9 1371 aa30.44■■■□□ 2.46
MMP28-201ENST00000605424 ARAP1Q96P48 1450 aa30.41■■■□□ 2.46
MMP28-201ENST00000605424 WDR62O43379 1518 aa30.37■■■□□ 2.45
MMP28-201ENST00000605424 TTBK1Q5TCY1 1321 aaPredicted RBP30.35■■■□□ 2.45
MMP28-201ENST00000605424 RANGAP1P46060 587 aaPredicted RBP30.34■■■□□ 2.45
MMP28-201ENST00000605424 RAD54L2Q9Y4B4 1467 aa30.34■■■□□ 2.45
MMP28-201ENST00000605424 ARHGAP35Q9NRY4 1499 aa30.29■■■□□ 2.44
MMP28-201ENST00000605424 WDR97A6NE52 1622 aa30.27■■■□□ 2.44
MMP28-201ENST00000605424 CUL7Q14999 1698 aa30.27■■■□□ 2.44
MMP28-201ENST00000605424 CCER1Q8TC90 406 aaPredicted RBP30.18■■■□□ 2.42
MMP28-201ENST00000605424 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.16■■■□□ 2.42
MMP28-201ENST00000605424 ABCA5Q8WWZ7 1642 aa30.14■■■□□ 2.41
MMP28-201ENST00000605424 MAP3K1Q13233 1512 aa30.06■■■□□ 2.4
MMP28-201ENST00000605424 GAPVD1Q14C86 1478 aa30.06■■■□□ 2.4
MMP28-201ENST00000605424 TARBP1Q13395 1621 aaKnown RBP30.05■■■□□ 2.4
MMP28-201ENST00000605424 EFCAB5A4FU69 1503 aa30.01■■■□□ 2.4
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms