Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LSM1O15116 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LSM1O15116 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LSM1O15116 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LSM1O15116 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
LSM1O15116 AL162430.1-201ENST00000480705 870 ntBASIC19.01■□□□□ 0.63
LSM1O15116 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC19.01■□□□□ 0.63
LSM1O15116 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.01■□□□□ 0.63
LSM1O15116 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
LSM1O15116 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LSM1O15116 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19.01■□□□□ 0.63
LSM1O15116 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LSM1O15116 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC19.01■□□□□ 0.63
LSM1O15116 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LSM1O15116 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC19.01■□□□□ 0.63
LSM1O15116 Z82202.1-201ENST00000623446 1880 ntBASIC19.01■□□□□ 0.63
LSM1O15116 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LSM1O15116 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LSM1O15116 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LSM1O15116 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LSM1O15116 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
LSM1O15116 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC19■□□□□ 0.63
LSM1O15116 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19■□□□□ 0.63
LSM1O15116 AC093787.1-201ENST00000450396 207 ntBASIC19■□□□□ 0.63
LSM1O15116 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19■□□□□ 0.63
LSM1O15116 MDK-213ENST00000617138 635 ntTSL 2 BASIC19■□□□□ 0.63
LSM1O15116 ANKRD20A6P-201ENST00000618763 204 ntBASIC19■□□□□ 0.63
LSM1O15116 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LSM1O15116 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
LSM1O15116 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
LSM1O15116 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LSM1O15116 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LSM1O15116 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
LSM1O15116 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19■□□□□ 0.63
LSM1O15116 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LSM1O15116 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
LSM1O15116 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.99■□□□□ 0.63
LSM1O15116 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.99■□□□□ 0.63
LSM1O15116 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
LSM1O15116 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LSM1O15116 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LSM1O15116 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LSM1O15116 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LSM1O15116 AL512625.2-201ENST00000417533 625 ntBASIC18.99■□□□□ 0.63
LSM1O15116 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC18.99■□□□□ 0.63
LSM1O15116 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC18.99■□□□□ 0.63
LSM1O15116 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC18.99■□□□□ 0.63
LSM1O15116 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
LSM1O15116 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LSM1O15116 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.99■□□□□ 0.63
LSM1O15116 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LSM1O15116 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LSM1O15116 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LSM1O15116 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.99■□□□□ 0.63
LSM1O15116 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
LSM1O15116 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LSM1O15116 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LSM1O15116 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LSM1O15116 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LSM1O15116 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LSM1O15116 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.98■□□□□ 0.63
LSM1O15116 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LSM1O15116 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LSM1O15116 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LSM1O15116 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
LSM1O15116 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC18.98■□□□□ 0.63
LSM1O15116 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC18.98■□□□□ 0.63
LSM1O15116 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC18.98■□□□□ 0.63
LSM1O15116 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
LSM1O15116 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.98■□□□□ 0.63
LSM1O15116 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
LSM1O15116 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
LSM1O15116 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
LSM1O15116 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LSM1O15116 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.98■□□□□ 0.63
LSM1O15116 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LSM1O15116 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LSM1O15116 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.98■□□□□ 0.63
LSM1O15116 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.98■□□□□ 0.63
LSM1O15116 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LSM1O15116 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LSM1O15116 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LSM1O15116 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC18.97■□□□□ 0.63
LSM1O15116 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LSM1O15116 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LSM1O15116 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LSM1O15116 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
LSM1O15116 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LSM1O15116 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
LSM1O15116 METTL26-203ENST00000397664 604 ntTSL 2 BASIC18.97■□□□□ 0.63
LSM1O15116 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC18.97■□□□□ 0.63
LSM1O15116 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC18.97■□□□□ 0.63
LSM1O15116 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LSM1O15116 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.97■□□□□ 0.63
LSM1O15116 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
LSM1O15116 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.97■□□□□ 0.63
LSM1O15116 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.97■□□□□ 0.63
LSM1O15116 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LSM1O15116 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
LSM1O15116 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms