RNA–Protein interactions for RNA: ENST00000383738.6

CSPG5-202, Transcript of chondroitin sulfate proteoglycan 5, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CSPG5, Length 4,161 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG5-202ENST00000383738 NISCHQ9Y2I1 1504 aa35.1■■■■□ 3.21
CSPG5-202ENST00000383738 DCAF8L2P0C7V8 631 aa34.61■■■■□ 3.13
CSPG5-202ENST00000383738 SHROOM4Q9ULL8 1493 aa32.88■■■□□ 2.85
CSPG5-202ENST00000383738 SUPT5HO00267 1087 aaKnown RBP32.66■■■□□ 2.82
CSPG5-202ENST00000383738 EHMT2Q96KQ7 1210 aa31.45■■■□□ 2.63
CSPG5-202ENST00000383738 FAM9AQ8IZU1 332 aaPredicted RBP30.73■■■□□ 2.51
CSPG5-202ENST00000383738 PCGF6Q9BYE7 350 aa30.61■■■□□ 2.49
CSPG5-202ENST00000383738 ABCC9O60706 1549 aa30.44■■■□□ 2.46
CSPG5-202ENST00000383738 TTBK1Q5TCY1 1321 aaPredicted RBP30.11■■■□□ 2.41
CSPG5-202ENST00000383738 RANGAP1P46060 587 aaPredicted RBP30.07■■■□□ 2.4
CSPG5-202ENST00000383738 PABPN1Q86U42 306 aaKnown RBP eCLIP30.06■■■□□ 2.4
CSPG5-202ENST00000383738 TRIM41Q8WV44 630 aa29.99■■■□□ 2.39
CSPG5-202ENST00000383738 PPARGC1BQ86YN6 1023 aaKnown RBP29.97■■■□□ 2.39
CSPG5-202ENST00000383738 HRCP23327 699 aa29.82■■■□□ 2.36
CSPG5-202ENST00000383738 LOC105371045A0A1W2PR82 267 aa29.5■■■□□ 2.31
CSPG5-202ENST00000383738 CHIC1Q5VXU3 224 aa29.45■■■□□ 2.31
CSPG5-202ENST00000383738 UBTFP17480 764 aaKnown RBP29.4■■■□□ 2.3
CSPG5-202ENST00000383738 APLP2Q06481 763 aa29.33■■■□□ 2.29
CSPG5-202ENST00000383738 ATP1B4Q9UN42 357 aaPredicted RBP29.26■■■□□ 2.27
CSPG5-202ENST00000383738 PELP1Q8IZL8 1130 aaKnown RBP29.23■■■□□ 2.27
CSPG5-202ENST00000383738 ZCCHC6Q5VYS8 1495 aaKnown RBP29.07■■■□□ 2.24
CSPG5-202ENST00000383738 SCRIBQ14160 1630 aa28.96■■■□□ 2.23
CSPG5-202ENST00000383738 YTHDC1Q96MU7 727 aaKnown RBP28.88■■■□□ 2.21
CSPG5-202ENST00000383738 CCER1Q8TC90 406 aaPredicted RBP28.79■■■□□ 2.2
CSPG5-202ENST00000383738 CCDC180Q9P1Z9 1646 aa28.77■■■□□ 2.2
CSPG5-202ENST00000383738 TRIM26Q12899 539 aaPredicted RBP28.76■■■□□ 2.19
CSPG5-202ENST00000383738 ZEB1P37275 1124 aaPredicted RBP28.73■■■□□ 2.19
CSPG5-202ENST00000383738 CENPBP07199 599 aaPredicted RBP28.72■■■□□ 2.19
CSPG5-202ENST00000383738 ITGAEP38570 1179 aa28.49■■■□□ 2.15
CSPG5-202ENST00000383738 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.32■■■□□ 2.12
CSPG5-202ENST00000383738 HNRNPUL2Q1KMD3 747 aaKnown RBP28.32■■■□□ 2.12
CSPG5-202ENST00000383738 GTF3C3Q9Y5Q9 886 aa28.26■■■□□ 2.11
CSPG5-202ENST00000383738 SCAF1Q9H7N4 1312 aaKnown RBP28.19■■■□□ 2.1
CSPG5-202ENST00000383738 MYT1Q01538 1121 aa28.18■■■□□ 2.1
CSPG5-202ENST00000383738 FBLN2P98095 1184 aa28.1■■■□□ 2.09
CSPG5-202ENST00000383738 P3H3Q8IVL6 736 aa28.06■■■□□ 2.08
CSPG5-202ENST00000383738 RSF1Q96T23 1441 aaPredicted RBP28.05■■■□□ 2.08
CSPG5-202ENST00000383738 DIEXFQ68CQ4 756 aaKnown RBP28.04■■■□□ 2.08
CSPG5-202ENST00000383738 RB1CC1Q8TDY2 1594 aa28.04■■■□□ 2.08
CSPG5-202ENST00000383738 CECR2Q9BXF3 1484 aa28.02■■■□□ 2.08
CSPG5-202ENST00000383738 ARID3CA6NKF2 412 aa27.98■■■□□ 2.07
CSPG5-202ENST00000383738 CSRNP3Q8WYN3 585 aa27.95■■■□□ 2.06
CSPG5-202ENST00000383738 MYO15BQ96JP2 1530 aa27.88■■■□□ 2.05
CSPG5-202ENST00000383738 ACIN1Q9UKV3 1341 aaKnown RBP27.87■■■□□ 2.05
CSPG5-202ENST00000383738 NACADO15069 1562 aa27.86■■■□□ 2.05
CSPG5-202ENST00000383738 NEUROD1Q13562 356 aa27.83■■■□□ 2.05
CSPG5-202ENST00000383738 MYT1LQ9UL68 1186 aa27.75■■■□□ 2.03
CSPG5-202ENST00000383738 FAM50AQ14320 339 aaKnown RBP27.7■■■□□ 2.03
CSPG5-202ENST00000383738 DCAF1Q9Y4B6 1507 aa27.55■■■□□ 2
CSPG5-202ENST00000383738 ERICH6Q7L0X2 663 aa27.55■■■□□ 2
CSPG5-202ENST00000383738 CNGB1Q14028 1251 aaPredicted RBP27.53■■■□□ 2
CSPG5-202ENST00000383738 MROH2BQ7Z745 1585 aa27.49■■□□□ 1.99
CSPG5-202ENST00000383738 BCANQ96GW7 911 aa27.45■■□□□ 1.98
CSPG5-202ENST00000383738 POLR3GLQ9BT43 218 aa27.4■■□□□ 1.98
CSPG5-202ENST00000383738 BAZ1BQ9UIG0 1483 aaKnown RBP27.4■■□□□ 1.98
CSPG5-202ENST00000383738 NEFLP07196 543 aa27.28■■□□□ 1.96
CSPG5-202ENST00000383738 BAZ1AQ9NRL2 1556 aaPredicted RBP27.26■■□□□ 1.95
CSPG5-202ENST00000383738 TRIM52Q96A61 297 aa27.26■■□□□ 1.95
CSPG5-202ENST00000383738 ZNF777Q9ULD5 760 aaPredicted RBP27.19■■□□□ 1.94
CSPG5-202ENST00000383738 WRNQ14191 1432 aaPredicted RBP eCLIP27.18■■□□□ 1.94
CSPG5-202ENST00000383738 ZNF316A6NFI3 1004 aaPredicted RBP27.16■■□□□ 1.94
CSPG5-202ENST00000383738 WIZO95785 1651 aa27.08■■□□□ 1.93
CSPG5-202ENST00000383738 CCDC88BA6NC98 1476 aa27.08■■□□□ 1.93
CSPG5-202ENST00000383738 SOGA1O94964 1423 aa27.05■■□□□ 1.92
CSPG5-202ENST00000383738 CHMP7Q8WUX9 453 aaPredicted RBP27.01■■□□□ 1.91
CSPG5-202ENST00000383738 ABCC8Q09428 1581 aa27.01■■□□□ 1.91
CSPG5-202ENST00000383738 ZNF326Q5BKZ1 582 aaKnown RBP27■■□□□ 1.91
CSPG5-202ENST00000383738 MIER1Q8N108 512 aa26.97■■□□□ 1.91
CSPG5-202ENST00000383738 CHIC2Q9UKJ5 165 aa26.94■■□□□ 1.9
CSPG5-202ENST00000383738 CLIP1P30622 1438 aa26.89■■□□□ 1.9
CSPG5-202ENST00000383738 CEP162Q5TB80 1403 aa26.82■■□□□ 1.88
CSPG5-202ENST00000383738 ATAD2BQ9ULI0 1458 aa26.72■■□□□ 1.87
CSPG5-202ENST00000383738 KIF27Q86VH2 1401 aa26.7■■□□□ 1.86
CSPG5-202ENST00000383738 SLC4A1APQ9BWU0 796 aaKnown RBP26.69■■□□□ 1.86
CSPG5-202ENST00000383738 ERCC6Q03468 1493 aa26.69■■□□□ 1.86
CSPG5-202ENST00000383738 TDRD9Q8NDG6 1382 aaKnown RBP26.69■■□□□ 1.86
CSPG5-202ENST00000383738 KCNH8Q96L42 1107 aa26.67■■□□□ 1.86
CSPG5-202ENST00000383738 CDK11AQ9UQ88 783 aaPredicted RBP26.67■■□□□ 1.86
CSPG5-202ENST00000383738 CUX2O14529 1486 aa26.65■■□□□ 1.86
CSPG5-202ENST00000383738 GOLGA3Q08378 1498 aa26.64■■□□□ 1.86
CSPG5-202ENST00000383738 FKBP8Q14318 412 aa26.61■■□□□ 1.85
CSPG5-202ENST00000383738 MTUS2Q5JR59 1369 aa26.6■■□□□ 1.85
CSPG5-202ENST00000383738 PLPPR3Q6T4P5 718 aa26.58■■□□□ 1.85
CSPG5-202ENST00000383738 SMARCA4P51532 1647 aa26.57■■□□□ 1.84
CSPG5-202ENST00000383738 SMARCA2P51531 1590 aa26.57■■□□□ 1.84
CSPG5-202ENST00000383738 RUSC2Q8N2Y8 1516 aa26.56■■□□□ 1.84
CSPG5-202ENST00000383738 RRP7BPQ9NSQ0 103 aa26.55■■□□□ 1.84
CSPG5-202ENST00000383738 DNAJC5BQ9UF47 199 aa26.54■■□□□ 1.84
CSPG5-202ENST00000383738 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.54■■□□□ 1.84
CSPG5-202ENST00000383738 TNIKQ9UKE5 1360 aa26.53■■□□□ 1.84
CSPG5-202ENST00000383738 TOP2AP11388 1531 aaKnown RBP26.53■■□□□ 1.84
CSPG5-202ENST00000383738 HIRIP3Q9BW71 556 aaPredicted RBP26.52■■□□□ 1.84
CSPG5-202ENST00000383738 CARMIL1Q5VZK9 1371 aa26.52■■□□□ 1.84
CSPG5-202ENST00000383738 EEA1Q15075 1411 aa26.52■■□□□ 1.84
CSPG5-202ENST00000383738 SENP3Q9H4L4 574 aaPredicted RBP26.51■■□□□ 1.83
CSPG5-202ENST00000383738 CADPSQ9ULU8 1353 aa26.47■■□□□ 1.83
CSPG5-202ENST00000383738 CEP164Q9UPV0 1460 aa26.46■■□□□ 1.83
CSPG5-202ENST00000383738 NPM1P06748 294 aaKnown RBP eCLIP26.45■■□□□ 1.82
CSPG5-202ENST00000383738 KANK4Q5T7N3 995 aaPredicted RBP26.4■■□□□ 1.82
CSPG5-202ENST00000383738 CHGAP10645 457 aaKnown RBP26.35■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms