Protein–RNA interactions for Protein: Q9H9S3

SEC61A2, Protein transport protein Sec61 subunit alpha isoform 2, humanhuman

Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A2Q9H9S3 SHF-206ENST00000560471 2499 ntTSL 5 BASIC23.12■■□□□ 1.29
SEC61A2Q9H9S3 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
SEC61A2Q9H9S3 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
SEC61A2Q9H9S3 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
SEC61A2Q9H9S3 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
SEC61A2Q9H9S3 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
SEC61A2Q9H9S3 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC23.1■■□□□ 1.29
SEC61A2Q9H9S3 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
SEC61A2Q9H9S3 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
SEC61A2Q9H9S3 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
SEC61A2Q9H9S3 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
SEC61A2Q9H9S3 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
SEC61A2Q9H9S3 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC23.09■■□□□ 1.29
SEC61A2Q9H9S3 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
SEC61A2Q9H9S3 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
SEC61A2Q9H9S3 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
SEC61A2Q9H9S3 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC23.07■■□□□ 1.28
SEC61A2Q9H9S3 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
SEC61A2Q9H9S3 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC23.07■■□□□ 1.28
SEC61A2Q9H9S3 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
SEC61A2Q9H9S3 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC23.06■■□□□ 1.28
SEC61A2Q9H9S3 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC23.06■■□□□ 1.28
SEC61A2Q9H9S3 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SEC61A2Q9H9S3 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
SEC61A2Q9H9S3 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC23.05■■□□□ 1.28
SEC61A2Q9H9S3 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SEC61A2Q9H9S3 AL139393.2-201ENST00000608721 2025 ntBASIC23.04■■□□□ 1.28
SEC61A2Q9H9S3 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SEC61A2Q9H9S3 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC23.04■■□□□ 1.28
SEC61A2Q9H9S3 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
SEC61A2Q9H9S3 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC23.03■■□□□ 1.28
SEC61A2Q9H9S3 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC23.02■■□□□ 1.28
SEC61A2Q9H9S3 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SEC61A2Q9H9S3 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC23.01■■□□□ 1.27
SEC61A2Q9H9S3 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SEC61A2Q9H9S3 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SEC61A2Q9H9S3 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
SEC61A2Q9H9S3 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC23.01■■□□□ 1.27
SEC61A2Q9H9S3 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
SEC61A2Q9H9S3 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC23.01■■□□□ 1.27
SEC61A2Q9H9S3 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC23■■□□□ 1.27
SEC61A2Q9H9S3 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC23■■□□□ 1.27
SEC61A2Q9H9S3 AC044849.2-201ENST00000606596 710 ntBASIC23■■□□□ 1.27
SEC61A2Q9H9S3 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
SEC61A2Q9H9S3 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC23■■□□□ 1.27
SEC61A2Q9H9S3 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC22.99■■□□□ 1.27
SEC61A2Q9H9S3 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
SEC61A2Q9H9S3 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC22.99■■□□□ 1.27
SEC61A2Q9H9S3 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC22.99■■□□□ 1.27
SEC61A2Q9H9S3 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
SEC61A2Q9H9S3 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
SEC61A2Q9H9S3 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
SEC61A2Q9H9S3 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC22.96■■□□□ 1.27
SEC61A2Q9H9S3 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC22.95■■□□□ 1.26
SEC61A2Q9H9S3 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
SEC61A2Q9H9S3 AC127502.1-201ENST00000399971 1502 ntBASIC22.93■■□□□ 1.26
SEC61A2Q9H9S3 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC22.93■■□□□ 1.26
SEC61A2Q9H9S3 MIR6090-201ENST00000622481 60 ntBASIC22.93■■□□□ 1.26
SEC61A2Q9H9S3 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
SEC61A2Q9H9S3 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
SEC61A2Q9H9S3 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC22.92■■□□□ 1.26
SEC61A2Q9H9S3 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
SEC61A2Q9H9S3 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
SEC61A2Q9H9S3 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
SEC61A2Q9H9S3 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC22.91■■□□□ 1.26
SEC61A2Q9H9S3 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
SEC61A2Q9H9S3 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
SEC61A2Q9H9S3 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC22.9■■□□□ 1.26
SEC61A2Q9H9S3 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
SEC61A2Q9H9S3 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC22.9■■□□□ 1.26
SEC61A2Q9H9S3 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC22.89■■□□□ 1.26
SEC61A2Q9H9S3 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
SEC61A2Q9H9S3 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC22.89■■□□□ 1.25
SEC61A2Q9H9S3 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC22.89■■□□□ 1.25
SEC61A2Q9H9S3 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC22.88■■□□□ 1.25
SEC61A2Q9H9S3 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC22.88■■□□□ 1.25
SEC61A2Q9H9S3 AC108673.1-201ENST00000510422 1159 ntBASIC22.88■■□□□ 1.25
SEC61A2Q9H9S3 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC22.88■■□□□ 1.25
SEC61A2Q9H9S3 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC22.88■■□□□ 1.25
SEC61A2Q9H9S3 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
SEC61A2Q9H9S3 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
SEC61A2Q9H9S3 BOD1-206ENST00000480951 814 ntTSL 2 BASIC22.87■■□□□ 1.25
SEC61A2Q9H9S3 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
SEC61A2Q9H9S3 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
SEC61A2Q9H9S3 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
SEC61A2Q9H9S3 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC22.85■■□□□ 1.25
SEC61A2Q9H9S3 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
SEC61A2Q9H9S3 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC22.84■■□□□ 1.25
SEC61A2Q9H9S3 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC22.84■■□□□ 1.25
SEC61A2Q9H9S3 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
SEC61A2Q9H9S3 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC22.83■■□□□ 1.25
SEC61A2Q9H9S3 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC22.83■■□□□ 1.25
SEC61A2Q9H9S3 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
SEC61A2Q9H9S3 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
SEC61A2Q9H9S3 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
SEC61A2Q9H9S3 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
SEC61A2Q9H9S3 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
SEC61A2Q9H9S3 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC22.82■■□□□ 1.24
SEC61A2Q9H9S3 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC22.82■■□□□ 1.24
SEC61A2Q9H9S3 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 133.7 ms