Protein–RNA interactions for Protein: Q96D70

R3HDM4, R3H domain-containing protein 4, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
R3HDM4Q96D70 CHML-205ENST00000638160 705 ntTSL 3 BASIC21.26■□□□□ 0.99
R3HDM4Q96D70 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
R3HDM4Q96D70 AL139393.2-201ENST00000608721 2025 ntBASIC21.26■□□□□ 0.99
R3HDM4Q96D70 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
R3HDM4Q96D70 AC142086.6-201ENST00000621154 1765 ntBASIC21.25■□□□□ 0.99
R3HDM4Q96D70 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
R3HDM4Q96D70 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC21.25■□□□□ 0.99
R3HDM4Q96D70 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC21.25■□□□□ 0.99
R3HDM4Q96D70 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
R3HDM4Q96D70 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
R3HDM4Q96D70 MIR762-201ENST00000390236 83 ntBASIC21.24■□□□□ 0.99
R3HDM4Q96D70 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
R3HDM4Q96D70 AC005559.1-201ENST00000589661 871 ntBASIC21.22■□□□□ 0.99
R3HDM4Q96D70 DUX4L28-201ENST00000623687 678 ntBASIC21.22■□□□□ 0.99
R3HDM4Q96D70 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
R3HDM4Q96D70 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
R3HDM4Q96D70 AC010864.1-201ENST00000609407 1511 ntBASIC21.21■□□□□ 0.99
R3HDM4Q96D70 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC21.21■□□□□ 0.99
R3HDM4Q96D70 AC087741.3-201ENST00000624270 1347 ntBASIC21.21■□□□□ 0.99
R3HDM4Q96D70 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC21.2■□□□□ 0.98
R3HDM4Q96D70 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC21.2■□□□□ 0.98
R3HDM4Q96D70 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
R3HDM4Q96D70 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
R3HDM4Q96D70 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC21.2■□□□□ 0.98
R3HDM4Q96D70 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
R3HDM4Q96D70 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
R3HDM4Q96D70 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
R3HDM4Q96D70 AC044849.2-201ENST00000606596 710 ntBASIC21.19■□□□□ 0.98
R3HDM4Q96D70 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
R3HDM4Q96D70 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
R3HDM4Q96D70 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
R3HDM4Q96D70 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
R3HDM4Q96D70 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
R3HDM4Q96D70 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC21.17■□□□□ 0.98
R3HDM4Q96D70 ABHD17AP4-201ENST00000411545 909 ntBASIC21.17■□□□□ 0.98
R3HDM4Q96D70 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC21.16■□□□□ 0.98
R3HDM4Q96D70 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC21.16■□□□□ 0.98
R3HDM4Q96D70 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
R3HDM4Q96D70 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC21.15■□□□□ 0.98
R3HDM4Q96D70 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
R3HDM4Q96D70 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
R3HDM4Q96D70 MLEC-202ENST00000412616 841 ntTSL 3 BASIC21.15■□□□□ 0.98
R3HDM4Q96D70 MIR7108-201ENST00000614319 87 ntBASIC21.15■□□□□ 0.98
R3HDM4Q96D70 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
R3HDM4Q96D70 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
R3HDM4Q96D70 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC21.14■□□□□ 0.97
R3HDM4Q96D70 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
R3HDM4Q96D70 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
R3HDM4Q96D70 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC21.13■□□□□ 0.97
R3HDM4Q96D70 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
R3HDM4Q96D70 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
R3HDM4Q96D70 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
R3HDM4Q96D70 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
R3HDM4Q96D70 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
R3HDM4Q96D70 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
R3HDM4Q96D70 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
R3HDM4Q96D70 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
R3HDM4Q96D70 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
R3HDM4Q96D70 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
R3HDM4Q96D70 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC21.12■□□□□ 0.97
R3HDM4Q96D70 DRD5P2-201ENST00000421395 2012 ntBASIC21.12■□□□□ 0.97
R3HDM4Q96D70 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
R3HDM4Q96D70 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC21.12■□□□□ 0.97
R3HDM4Q96D70 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC21.1■□□□□ 0.97
R3HDM4Q96D70 DENR-202ENST00000455982 1052 ntTSL 5 BASIC21.1■□□□□ 0.97
R3HDM4Q96D70 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
R3HDM4Q96D70 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
R3HDM4Q96D70 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
R3HDM4Q96D70 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
R3HDM4Q96D70 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
R3HDM4Q96D70 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
R3HDM4Q96D70 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
R3HDM4Q96D70 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
R3HDM4Q96D70 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
R3HDM4Q96D70 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
R3HDM4Q96D70 PVT1-219ENST00000523427 938 ntTSL 3 BASIC21.07■□□□□ 0.96
R3HDM4Q96D70 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
R3HDM4Q96D70 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
R3HDM4Q96D70 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
R3HDM4Q96D70 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
R3HDM4Q96D70 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
R3HDM4Q96D70 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
R3HDM4Q96D70 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
R3HDM4Q96D70 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
R3HDM4Q96D70 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
R3HDM4Q96D70 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC21.03■□□□□ 0.96
R3HDM4Q96D70 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
R3HDM4Q96D70 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
R3HDM4Q96D70 BOD1-206ENST00000480951 814 ntTSL 2 BASIC21.03■□□□□ 0.96
R3HDM4Q96D70 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
R3HDM4Q96D70 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
R3HDM4Q96D70 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
R3HDM4Q96D70 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
R3HDM4Q96D70 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
R3HDM4Q96D70 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
R3HDM4Q96D70 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC21.02■□□□□ 0.96
R3HDM4Q96D70 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
R3HDM4Q96D70 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
R3HDM4Q96D70 RPS2-209ENST00000529806 993 ntTSL 3 BASIC21.01■□□□□ 0.95
R3HDM4Q96D70 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms