Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 NAGPA-208ENST00000564397 3286 ntTSL 212.77□□□□□ -0.368e-9■■■■■ 38.1
SMNDC1O75940 NAGPA-210ENST00000565876 544 ntTSL 412.77□□□□□ -0.378e-9■■■■■ 38.1
SMNDC1O75940 NAGPA-211ENST00000566137 574 ntTSL 312.51□□□□□ -0.418e-9■■■■■ 38.1
SMNDC1O75940 CD99P1-201ENST00000414513 3071 ntTSL 211.68□□□□□ -0.548e-9■■■■■ 38.1
SMNDC1O75940 RBBP4-203ENST00000401893 762 ntTSL 211.36□□□□□ -0.598e-9■■■■■ 38.1
SMNDC1O75940 RBBP4-215ENST00000524393 583 ntTSL 311.36□□□□□ -0.598e-9■■■■■ 38.1
SMNDC1O75940 RBBP4-213ENST00000490500 632 ntTSL 311.18□□□□□ -0.628e-9■■■■■ 38.1
SMNDC1O75940 RBBP4-216ENST00000525506 501 ntTSL 29.39□□□□□ -0.918e-9■■■■■ 38.1
SMNDC1O75940 CD99P1-202ENST00000430562 984 ntTSL 1 (best)8.36□□□□□ -1.078e-9■■■■■ 38.1
SMNDC1O75940 RBBP4-201ENST00000373485 1417 ntAPPRIS ALT1 TSL 1 (best) BASIC8.2□□□□□ -1.18e-9■■■■■ 38.1
SMNDC1O75940 RBBP4-217ENST00000526193 568 ntTSL 47.62□□□□□ -1.198e-9■■■■■ 38.1
SMNDC1O75940 RBBP4-202ENST00000373493 7943 ntAPPRIS P3 TSL 1 (best) BASIC7.18□□□□□ -1.268e-9■■■■■ 38.1
SMNDC1O75940 RBBP4-206ENST00000458695 1674 ntTSL 2 BASIC7.09□□□□□ -1.278e-9■■■■■ 38.1
SMNDC1O75940 RBBP4-214ENST00000492348 1547 ntTSL 27.04□□□□□ -1.288e-9■■■■■ 38.1
SMNDC1O75940 RBBP4-211ENST00000477563 544 ntTSL 56.87□□□□□ -1.318e-9■■■■■ 38.1
SMNDC1O75940 PPP1R8-202ENST00000311772 2344 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.193e-23■■■■■ 37.7
SMNDC1O75940 PPP1R8-203ENST00000373931 2651 ntTSL 1 (best) BASIC13.17□□□□□ -0.33e-23■■■■■ 37.7
SMNDC1O75940 PPP1R8-201ENST00000236412 2414 ntTSL 1 (best) BASIC13.01□□□□□ -0.333e-23■■■■■ 37.7
SMNDC1O75940 PPP1R8-204ENST00000431586 1029 ntTSL 311.36□□□□□ -0.593e-23■■■■■ 37.7
SMNDC1O75940 PPAN-205ENST00000446223 844 ntTSL 316.21■□□□□ 0.191e-21■■■■■ 37.5
SMNDC1O75940 CHTF18-217ENST00000567620 701 ntTSL 513.49□□□□□ -0.259e-7■■■■■ 37.4
SMNDC1O75940 AC015574.1-203ENST00000614344 498 ntTSL 59.07□□□□□ -0.963e-10■■■■■ 37.4
SMNDC1O75940 AC015574.1-202ENST00000616588 456 ntTSL 5 BASIC8.15□□□□□ -1.13e-10■■■■■ 37.4
SMNDC1O75940 AC015574.1-204ENST00000612595 512 ntTSL 57.84□□□□□ -1.153e-10■■■■■ 37.4
SMNDC1O75940 RNU2-3P-201ENST00000410144 191 ntBASIC5.5□□□□□ -1.533e-10■■■■■ 37.4
SMNDC1O75940 NR2F2-AS1-202ENST00000557863 515 ntTSL 314.29□□□□□ -0.121e-7■■■■■ 37.3
SMNDC1O75940 SNORD91A-202ENST00000609620 191 ntBASIC8.53□□□□□ -1.041e-25■■■■■ 37.2
SMNDC1O75940 SNORD91A-201ENST00000390861 95 nt2.97□□□□□ -1.931e-25■■■■■ 37.2
SMNDC1O75940 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC14.84□□□□□ -0.031e-59■■■■■ 37.1
SMNDC1O75940 STRIP2-202ENST00000435494 2866 ntTSL 1 (best) BASIC14.55□□□□□ -0.081e-10■■■■■ 36.8
SMNDC1O75940 PLEKHH3-206ENST00000591476 659 ntTSL 213.54□□□□□ -0.241e-10■■■■■ 36.8
SMNDC1O75940 STRIP2-201ENST00000249344 5115 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.251e-10■■■■■ 36.8
SMNDC1O75940 RNU6-468P-201ENST00000384003 109 ntBASIC8.24□□□□□ -1.096e-9■■■■■ 36.6
SMNDC1O75940 THEM7P-201ENST00000419556 672 ntBASIC5.89□□□□□ -1.474e-10■■■■■ 36.6
SMNDC1O75940 CHD8-210ENST00000555962 1232 ntTSL 58.36□□□□□ -1.074e-18■■■■■ 36.5
SMNDC1O75940 SNORD8-201ENST00000363915 110 ntBASIC6.49□□□□□ -1.374e-18■■■■■ 36.5
SMNDC1O75940 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.165e-14■■■■■ 36.4
SMNDC1O75940 NELFCD-201ENST00000460601 2137 ntTSL 1 (best)15.39■□□□□ 0.055e-14■■■■■ 36.4
SMNDC1O75940 NELFCD-204ENST00000474543 2047 ntTSL 515.07■□□□□ 05e-14■■■■■ 36.4
SMNDC1O75940 NELFCD-205ENST00000477741 2070 ntTSL 1 (best)12.9□□□□□ -0.345e-14■■■■■ 36.4
SMNDC1O75940 NELFCD-209ENST00000486263 708 ntTSL 212.3□□□□□ -0.445e-14■■■■■ 36.4
SMNDC1O75940 NELFCD-207ENST00000479207 1112 ntTSL 310.12□□□□□ -0.795e-14■■■■■ 36.4
SMNDC1O75940 NELFCD-206ENST00000478389 3581 ntTSL 29.28□□□□□ -0.925e-14■■■■■ 36.4
SMNDC1O75940 NR2F2-AS1-210ENST00000561344 966 ntTSL 1 (best) BASIC10.86□□□□□ -0.673e-7■■■■■ 36.4
SMNDC1O75940 NR2F2-AS1-201ENST00000502125 1930 ntTSL 2 BASIC10.72□□□□□ -0.693e-7■■■■■ 36.4
SMNDC1O75940 NR2F2-AS1-203ENST00000558929 574 ntTSL 5 BASIC8.34□□□□□ -1.073e-7■■■■■ 36.4
SMNDC1O75940 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC7.64□□□□□ -1.193e-7■■■■■ 36.4
SMNDC1O75940 NR2F2-AS1-209ENST00000560800 549 ntTSL 4 BASIC7.21□□□□□ -1.263e-7■■■■■ 36.4
SMNDC1O75940 AP1G2-223ENST00000556277 891 ntTSL 514.41□□□□□ -0.12e-8■■■■■ 36.2
SMNDC1O75940 HK2-201ENST00000290573 5772 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.192e-8■■■■■ 36.2
SMNDC1O75940 AP1G2-225ENST00000556743 1456 ntTSL 1 (best)13.74□□□□□ -0.212e-8■■■■■ 36.2
SMNDC1O75940 AP1G2-206ENST00000553629 1301 ntTSL 1 (best)12.61□□□□□ -0.392e-8■■■■■ 36.2
SMNDC1O75940 AP1G2-234ENST00000557619 1004 ntTSL 211.66□□□□□ -0.542e-8■■■■■ 36.2
SMNDC1O75940 HK2-202ENST00000409174 5278 ntTSL 1 (best) BASIC10.86□□□□□ -0.672e-8■■■■■ 36.2
SMNDC1O75940 AC074091.1-201ENST00000505973 1741 ntTSL 2 BASIC10.44□□□□□ -0.742e-8■■■■■ 36.2
SMNDC1O75940 AP1G2-227ENST00000556943 747 ntTSL 310.24□□□□□ -0.772e-8■■■■■ 36.2
SMNDC1O75940 AP1G2-220ENST00000555896 927 ntTSL 1 (best)9.94□□□□□ -0.822e-8■■■■■ 36.2
SMNDC1O75940 ZNF512-204ENST00000416005 3515 ntTSL 2 BASIC9.19□□□□□ -0.942e-8■■■■■ 36.2
SMNDC1O75940 EP400-204ENST00000389561 12317 ntAPPRIS P1 TSL 5 BASIC9.17□□□□□ -0.942e-8■■■■■ 36.2
SMNDC1O75940 EP400-205ENST00000389562 12836 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.942e-8■■■■■ 36.2
SMNDC1O75940 ZNF512-202ENST00000379717 3417 ntAPPRIS ALT1 TSL 5 BASIC9.08□□□□□ -0.962e-8■■■■■ 36.2
SMNDC1O75940 ZNF512-201ENST00000355467 3541 ntAPPRIS P2 TSL 2 BASIC8.9□□□□□ -0.982e-8■■■■■ 36.2
SMNDC1O75940 ZNF512-203ENST00000413371 3703 ntTSL 2 BASIC8.28□□□□□ -1.082e-8■■■■■ 36.2
SMNDC1O75940 ZNF512-208ENST00000556601 3543 ntTSL 1 (best) BASIC8.12□□□□□ -1.112e-8■■■■■ 36.2
SMNDC1O75940 ZNF512-206ENST00000488055 2465 ntTSL 27.02□□□□□ -1.292e-8■■■■■ 36.2
SMNDC1O75940 KPNA4-201ENST00000334256 8981 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.292e-53■■■■■ 36.2
SMNDC1O75940 SCARNA7-201ENST00000458797 330 ntBASIC9.7□□□□□ -0.862e-53■■■■■ 36.2
SMNDC1O75940 KPNA4-203ENST00000483437 510 ntTSL 57.62□□□□□ -1.192e-53■■■■■ 36.2
SMNDC1O75940 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.591e-11■■■■■ 35.9
SMNDC1O75940 QSOX2-202ENST00000455222 851 ntTSL 56.15□□□□□ -1.421e-11■■■■■ 35.9
SMNDC1O75940 RNU2-5P-201ENST00000410533 180 ntBASIC7.02□□□□□ -1.292e-10■■■■■ 35.8
SMNDC1O75940 SSBP4-215ENST00000625926 162 ntTSL 5 BASIC9.75□□□□□ -0.855e-8■■■■■ 35.7
SMNDC1O75940 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC22.75■■□□□ 1.232e-69■■■■■ 35.4
SMNDC1O75940 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.38■□□□□ 0.372e-69■■■■■ 35.4
SMNDC1O75940 RPS20-203ENST00000519369 824 ntTSL 212.03□□□□□ -0.482e-69■■■■■ 35.4
SMNDC1O75940 RPS20-208ENST00000521262 650 ntAPPRIS P1 TSL 2 BASIC11.16□□□□□ -0.622e-69■■■■■ 35.4
SMNDC1O75940 RPS20-209ENST00000521289 737 ntTSL 59.95□□□□□ -0.822e-69■■■■■ 35.4
SMNDC1O75940 RPS20-212ENST00000618656 627 ntTSL 3 BASIC8.48□□□□□ -1.052e-69■■■■■ 35.4
SMNDC1O75940 RPS20-207ENST00000520627 423 ntTSL 5 BASIC8.43□□□□□ -1.062e-69■■■■■ 35.4
SMNDC1O75940 RPS20-201ENST00000009589 626 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.172e-69■■■■■ 35.4
SMNDC1O75940 RPS20-204ENST00000519606 424 ntTSL 3 BASIC7.72□□□□□ -1.172e-69■■■■■ 35.4
SMNDC1O75940 RPS20-206ENST00000520490 402 ntTSL 37.3□□□□□ -1.242e-69■■■■■ 35.4
SMNDC1O75940 RPS20-205ENST00000519807 1826 ntTSL 2 BASIC6.76□□□□□ -1.332e-69■■■■■ 35.4
SMNDC1O75940 RPS20-202ENST00000518875 671 ntTSL 2 BASIC6.43□□□□□ -1.382e-69■■■■■ 35.4
SMNDC1O75940 SNORD54-201ENST00000459159 67 ntBASIC-2.57□□□□□ -2.822e-69■■■■■ 35.4
SMNDC1O75940 SNORD28-201ENST00000384706 75 ntBASIC1.43□□□□□ -2.188e-72■■■■■ 35.4
SMNDC1O75940 RPL7A-205ENST00000468019 941 ntTSL 211.67□□□□□ -0.546e-56■■■■■ 35.2
SMNDC1O75940 RPL7A-207ENST00000489392 966 ntTSL 59.35□□□□□ -0.916e-56■■■■■ 35.2
SMNDC1O75940 RPL7A-201ENST00000315731 680 ntTSL 2 BASIC8.26□□□□□ -1.096e-56■■■■■ 35.2
SMNDC1O75940 RPL7A-204ENST00000463740 1164 ntTSL 56.73□□□□□ -1.336e-56■■■■■ 35.2
SMNDC1O75940 RPL7A-202ENST00000323345 891 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.46e-56■■■■■ 35.2
SMNDC1O75940 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.961e-9■■■■■ 35.2
SMNDC1O75940 MUS81-213ENST00000530928 1793 ntTSL 218.38■□□□□ 0.531e-9■■■■■ 35.2
SMNDC1O75940 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.521e-9■■■■■ 35.2
SMNDC1O75940 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.24■□□□□ 0.511e-9■■■■■ 35.2
SMNDC1O75940 MUS81-207ENST00000529374 1232 ntTSL 517.32■□□□□ 0.361e-9■■■■■ 35.2
SMNDC1O75940 MUS81-202ENST00000524647 1817 ntTSL 517.16■□□□□ 0.341e-9■■■■■ 35.2
SMNDC1O75940 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.21e-9■■■■■ 35.2
SMNDC1O75940 MUS81-211ENST00000530111 692 ntTSL 315.45■□□□□ 0.061e-9■■■■■ 35.2
SMNDC1O75940 MUS81-204ENST00000525147 482 ntTSL 514.39□□□□□ -0.111e-9■■■■■ 35.2
Retrieved 100 of 11,362 protein–RNA pairs in 307 ms