RNA–Protein interactions for RNA: ENST00000334256.8

KPNA4-201, Transcript of karyopherin subunit alpha 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene KPNA4, Length 8,981 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KPNA4-201ENST00000334256 DCAF8L2P0C7V8 631 aa22.63■■□□□ 1.21
KPNA4-201ENST00000334256 EHMT2Q96KQ7 1210 aa21.1■□□□□ 0.97
KPNA4-201ENST00000334256 MYT1Q01538 1121 aa20.52■□□□□ 0.87
KPNA4-201ENST00000334256 PELP1Q8IZL8 1130 aaKnown RBP20.41■□□□□ 0.86
KPNA4-201ENST00000334256 FAM9AQ8IZU1 332 aaPredicted RBP20.38■□□□□ 0.85
KPNA4-201ENST00000334256 ERICH6Q7L0X2 663 aa20.31■□□□□ 0.84
KPNA4-201ENST00000334256 CHIC1Q5VXU3 224 aa20.2■□□□□ 0.82
KPNA4-201ENST00000334256 ATP1B4Q9UN42 357 aaPredicted RBP20.18■□□□□ 0.82
KPNA4-201ENST00000334256 TTBK1Q5TCY1 1321 aaPredicted RBP20.15■□□□□ 0.82
KPNA4-201ENST00000334256 RANGAP1P46060 587 aaPredicted RBP20.12■□□□□ 0.81
KPNA4-201ENST00000334256 MYT1LQ9UL68 1186 aa20.11■□□□□ 0.81
KPNA4-201ENST00000334256 SUPT5HO00267 1087 aaKnown RBP19.98■□□□□ 0.79
KPNA4-201ENST00000334256 APLP2Q06481 763 aa19.95■□□□□ 0.78
KPNA4-201ENST00000334256 SLC4A1APQ9BWU0 796 aaKnown RBP19.58■□□□□ 0.73
KPNA4-201ENST00000334256 CCER1Q8TC90 406 aaPredicted RBP19.5■□□□□ 0.71
KPNA4-201ENST00000334256 CNGB1Q14028 1251 aaPredicted RBP19.44■□□□□ 0.7
KPNA4-201ENST00000334256 SHROOM4Q9ULL8 1493 aa19.41■□□□□ 0.7
KPNA4-201ENST00000334256 POLR3GLQ9BT43 218 aa19.4■□□□□ 0.7
KPNA4-201ENST00000334256 YTHDC1Q96MU7 727 aaKnown RBP19.35■□□□□ 0.69
KPNA4-201ENST00000334256 SLC24A1O60721 1099 aa19.32■□□□□ 0.68
KPNA4-201ENST00000334256 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.27■□□□□ 0.68
KPNA4-201ENST00000334256 HNRNPUL2Q1KMD3 747 aaKnown RBP19.27■□□□□ 0.68
KPNA4-201ENST00000334256 PLPPR3Q6T4P5 718 aa19.22■□□□□ 0.67
KPNA4-201ENST00000334256 PCGF6Q9BYE7 350 aa19.16■□□□□ 0.66
KPNA4-201ENST00000334256 BCL11AQ9H165 835 aa19.14■□□□□ 0.65
KPNA4-201ENST00000334256 DAXXQ9UER7 740 aaPredicted RBP19.06■□□□□ 0.64
KPNA4-201ENST00000334256 BCANQ96GW7 911 aa18.99■□□□□ 0.63
KPNA4-201ENST00000334256 NEFLP07196 543 aa18.98■□□□□ 0.63
KPNA4-201ENST00000334256 CENPBP07199 599 aaPredicted RBP18.94■□□□□ 0.62
KPNA4-201ENST00000334256 A0A0G2JS52 829 aa18.8■□□□□ 0.6
KPNA4-201ENST00000334256 ITGAEP38570 1179 aa18.71■□□□□ 0.59
KPNA4-201ENST00000334256 UBTFP17480 764 aaKnown RBP18.67■□□□□ 0.58
KPNA4-201ENST00000334256 CLSPNQ9HAW4 1339 aa18.66■□□□□ 0.58
KPNA4-201ENST00000334256 SCAF1Q9H7N4 1312 aaKnown RBP18.59■□□□□ 0.57
KPNA4-201ENST00000334256 ZNF316A6NFI3 1004 aaPredicted RBP18.57■□□□□ 0.56
KPNA4-201ENST00000334256 PLEKHG5O94827 1062 aa18.55■□□□□ 0.56
KPNA4-201ENST00000334256 NCBP3Q53F19 620 aaKnown RBP18.54■□□□□ 0.56
KPNA4-201ENST00000334256 PPARGC1BQ86YN6 1023 aaKnown RBP18.5■□□□□ 0.55
KPNA4-201ENST00000334256 TULP1O00294 542 aaPredicted RBP18.44■□□□□ 0.54
KPNA4-201ENST00000334256 SENP3Q9H4L4 574 aaPredicted RBP18.44■□□□□ 0.54
KPNA4-201ENST00000334256 RTL5Q5HYW3 569 aaPredicted RBP18.4■□□□□ 0.54
KPNA4-201ENST00000334256 ZBTB47Q9UFB7 747 aaPredicted RBP18.39■□□□□ 0.54
KPNA4-201ENST00000334256 FBLN2P98095 1184 aa18.32■□□□□ 0.52
KPNA4-201ENST00000334256 ESF1Q9H501 851 aaKnown RBP18.24■□□□□ 0.51
KPNA4-201ENST00000334256 EIF5BO60841 1220 aaKnown RBP18.23■□□□□ 0.51
KPNA4-201ENST00000334256 ZBTB7CA1YPR0 619 aa18.12■□□□□ 0.49
KPNA4-201ENST00000334256 TRIM41Q8WV44 630 aa18.09■□□□□ 0.49
KPNA4-201ENST00000334256 STAG3Q9UJ98 1225 aa18.05■□□□□ 0.48
KPNA4-201ENST00000334256 ZNF326Q5BKZ1 582 aaKnown RBP18.05■□□□□ 0.48
KPNA4-201ENST00000334256 ARXQ96QS3 562 aa17.99■□□□□ 0.47
KPNA4-201ENST00000334256 NEFMP07197 916 aa17.99■□□□□ 0.47
KPNA4-201ENST00000334256 CDK11BP21127 795 aaKnown RBP17.96■□□□□ 0.47
KPNA4-201ENST00000334256 CDK11AQ9UQ88 783 aaPredicted RBP17.96■□□□□ 0.47
KPNA4-201ENST00000334256 TRIM52Q96A61 297 aa17.95■□□□□ 0.46
KPNA4-201ENST00000334256 CANXP27824 592 aaKnown RBP17.94■□□□□ 0.46
KPNA4-201ENST00000334256 HAP1P54257 671 aaPredicted RBP17.92■□□□□ 0.46
KPNA4-201ENST00000334256 CHGAP10645 457 aaKnown RBP17.91■□□□□ 0.46
KPNA4-201ENST00000334256 NPM2Q86SE8 214 aaKnown RBP17.88■□□□□ 0.45
KPNA4-201ENST00000334256 ARID3CA6NKF2 412 aa17.87■□□□□ 0.45
KPNA4-201ENST00000334256 NPHP1O15259 732 aa17.86■□□□□ 0.45
KPNA4-201ENST00000334256 C14orf37Q86TY3 774 aa17.85■□□□□ 0.45
KPNA4-201ENST00000334256 ZEB1P37275 1124 aaPredicted RBP17.84■□□□□ 0.45
KPNA4-201ENST00000334256 FAM50AQ14320 339 aaKnown RBP17.78■□□□□ 0.44
KPNA4-201ENST00000334256 KRI1Q8N9T8 703 aaKnown RBP17.74■□□□□ 0.43
KPNA4-201ENST00000334256 TAOK2Q9UL54 1235 aa17.73■□□□□ 0.43
KPNA4-201ENST00000334256 AMER1Q5JTC6 1135 aaPredicted RBP17.73■□□□□ 0.43
KPNA4-201ENST00000334256 PRM3Q9NNZ6 103 aa17.69■□□□□ 0.42
KPNA4-201ENST00000334256 NEUROD1Q13562 356 aa17.66■□□□□ 0.42
KPNA4-201ENST00000334256 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.66■□□□□ 0.42
KPNA4-201ENST00000334256 CLSTN1O94985 981 aa17.62■□□□□ 0.41
KPNA4-201ENST00000334256 TRHP20396 242 aaPredicted RBP17.59■□□□□ 0.41
KPNA4-201ENST00000334256 ZNF777Q9ULD5 760 aaPredicted RBP17.55■□□□□ 0.4
KPNA4-201ENST00000334256 NPM1P06748 294 aaKnown RBP eCLIP17.54■□□□□ 0.4
KPNA4-201ENST00000334256 AEBP2Q6ZN18 517 aaPredicted RBP17.54■□□□□ 0.4
KPNA4-201ENST00000334256 HSP90AA1P07900 732 aaKnown RBP17.53■□□□□ 0.4
KPNA4-201ENST00000334256 LMOD2Q6P5Q4 547 aa17.52■□□□□ 0.39
KPNA4-201ENST00000334256 ARID4BQ4LE39 1312 aaPredicted RBP17.52■□□□□ 0.39
KPNA4-201ENST00000334256 ANP32BQ92688 251 aaKnown RBP17.46■□□□□ 0.39
KPNA4-201ENST00000334256 TPRNQ4KMQ1 711 aa17.45■□□□□ 0.38
KPNA4-201ENST00000334256 PHF23Q9BUL5 403 aaPredicted RBP17.44■□□□□ 0.38
KPNA4-201ENST00000334256 NBR1Q14596 966 aa17.43■□□□□ 0.38
KPNA4-201ENST00000334256 HRCP23327 699 aa17.42■□□□□ 0.38
KPNA4-201ENST00000334256 ISY1Q9ULR0 285 aaKnown RBP17.42■□□□□ 0.38
KPNA4-201ENST00000334256 GLIPR1L2Q4G1C9 344 aa17.41■□□□□ 0.38
KPNA4-201ENST00000334256 SALL2Q9Y467 1007 aaPredicted RBP17.35■□□□□ 0.37
KPNA4-201ENST00000334256 ANO8Q9HCE9 1232 aaPredicted RBP17.35■□□□□ 0.37
KPNA4-201ENST00000334256 FBXO3Q9UK99 471 aa17.31■□□□□ 0.36
KPNA4-201ENST00000334256 GTF3C3Q9Y5Q9 886 aa17.3■□□□□ 0.36
KPNA4-201ENST00000334256 P3H3Q8IVL6 736 aa17.29■□□□□ 0.36
KPNA4-201ENST00000334256 DIEXFQ68CQ4 756 aaKnown RBP17.29■□□□□ 0.36
KPNA4-201ENST00000334256 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.28■□□□□ 0.362e-6■□□□□ 11
KPNA4-201ENST00000334256 PABPN1Q86U42 306 aaKnown RBP eCLIP17.27■□□□□ 0.35
KPNA4-201ENST00000334256 ANP32AP39687 249 aaKnown RBP17.26■□□□□ 0.35
KPNA4-201ENST00000334256 NISCHQ9Y2I1 1504 aa17.22■□□□□ 0.35
KPNA4-201ENST00000334256 CCDC9Q9Y3X0 531 aaKnown RBP17.21■□□□□ 0.34
KPNA4-201ENST00000334256 TRIM26Q12899 539 aaPredicted RBP17.2■□□□□ 0.34
KPNA4-201ENST00000334256 PPP1R15AO75807 674 aaPredicted RBP17.18■□□□□ 0.34
KPNA4-201ENST00000334256 GOLGA2Q08379 1002 aa17.18■□□□□ 0.34
KPNA4-201ENST00000334256 KLHL34Q8N239 644 aa17.17■□□□□ 0.34
KPNA4-201ENST00000334256 DCAF8L1A6NGE4 600 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms