Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19.3■□□□□ 0.68
LSM1O15116 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LSM1O15116 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.3■□□□□ 0.68
LSM1O15116 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.3■□□□□ 0.68
LSM1O15116 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
LSM1O15116 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LSM1O15116 STX7-201ENST00000367937 1090 ntTSL 5 BASIC19.3■□□□□ 0.68
LSM1O15116 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC19.3■□□□□ 0.68
LSM1O15116 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LSM1O15116 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LSM1O15116 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
LSM1O15116 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
LSM1O15116 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LSM1O15116 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LSM1O15116 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LSM1O15116 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LSM1O15116 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC19.3■□□□□ 0.68
LSM1O15116 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC19.3■□□□□ 0.68
LSM1O15116 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LSM1O15116 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LSM1O15116 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LSM1O15116 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LSM1O15116 AL020996.1-203ENST00000536896 2307 ntBASIC19.29■□□□□ 0.68
LSM1O15116 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LSM1O15116 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LSM1O15116 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.29■□□□□ 0.68
LSM1O15116 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
LSM1O15116 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.29■□□□□ 0.68
LSM1O15116 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LSM1O15116 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
LSM1O15116 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LSM1O15116 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.29■□□□□ 0.68
LSM1O15116 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LSM1O15116 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC19.29■□□□□ 0.68
LSM1O15116 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
LSM1O15116 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC19.29■□□□□ 0.68
LSM1O15116 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC19.29■□□□□ 0.68
LSM1O15116 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC19.29■□□□□ 0.68
LSM1O15116 AC013268.1-206ENST00000638368 961 ntBASIC19.29■□□□□ 0.68
LSM1O15116 AC112229.1-201ENST00000639295 961 ntBASIC19.29■□□□□ 0.68
LSM1O15116 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.29■□□□□ 0.68
LSM1O15116 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LSM1O15116 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
LSM1O15116 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LSM1O15116 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.29■□□□□ 0.68
LSM1O15116 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.28■□□□□ 0.68
LSM1O15116 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.28■□□□□ 0.68
LSM1O15116 AC116562.4-201ENST00000641316 2276 ntBASIC19.28■□□□□ 0.68
LSM1O15116 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LSM1O15116 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.28■□□□□ 0.68
LSM1O15116 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
LSM1O15116 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LSM1O15116 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.28■□□□□ 0.68
LSM1O15116 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
LSM1O15116 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LSM1O15116 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LSM1O15116 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LSM1O15116 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
LSM1O15116 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LSM1O15116 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LSM1O15116 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19.28■□□□□ 0.68
LSM1O15116 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.28■□□□□ 0.68
LSM1O15116 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.28■□□□□ 0.68
LSM1O15116 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.28■□□□□ 0.68
LSM1O15116 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LSM1O15116 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LSM1O15116 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
LSM1O15116 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.28■□□□□ 0.68
LSM1O15116 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
LSM1O15116 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.28■□□□□ 0.68
LSM1O15116 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LSM1O15116 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
LSM1O15116 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LSM1O15116 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
LSM1O15116 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.27■□□□□ 0.68
LSM1O15116 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LSM1O15116 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LSM1O15116 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LSM1O15116 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
LSM1O15116 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LSM1O15116 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC19.27■□□□□ 0.68
LSM1O15116 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
LSM1O15116 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
LSM1O15116 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.27■□□□□ 0.68
LSM1O15116 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.27■□□□□ 0.68
LSM1O15116 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC19.27■□□□□ 0.68
LSM1O15116 SPI1-203ENST00000533030 661 ntTSL 2 BASIC19.27■□□□□ 0.68
LSM1O15116 PLD4-205ENST00000553861 667 ntTSL 2 BASIC19.27■□□□□ 0.68
LSM1O15116 MIR6821-201ENST00000617625 74 ntBASIC19.27■□□□□ 0.68
LSM1O15116 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LSM1O15116 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LSM1O15116 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LSM1O15116 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC19.27■□□□□ 0.68
LSM1O15116 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
LSM1O15116 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.27■□□□□ 0.67
LSM1O15116 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
LSM1O15116 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
LSM1O15116 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC19.27■□□□□ 0.67
LSM1O15116 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
LSM1O15116 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms