RNA–Protein interactions for RNA: ENST00000333130.3

MRPL40-201, Transcript of mitochondrial ribosomal protein L40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MRPL40, Length 1,387 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL40-201ENST00000333130 NISCHQ9Y2I1 1504 aa49.2■■■■■ 5.47
MRPL40-201ENST00000333130 CCDC180Q9P1Z9 1646 aa43.76■■■■■ 4.6
MRPL40-201ENST00000333130 ABCC9O60706 1549 aa42.43■■■■■ 4.38
MRPL40-201ENST00000333130 ZCCHC6Q5VYS8 1495 aaKnown RBP41.05■■■■■ 4.16
MRPL40-201ENST00000333130 RB1CC1Q8TDY2 1594 aa41.05■■■■■ 4.16
MRPL40-201ENST00000333130 NACADO15069 1562 aa41.04■■■■■ 4.16
MRPL40-201ENST00000333130 DCAF8L2P0C7V8 631 aa40.99■■■■■ 4.15
MRPL40-201ENST00000333130 MYO15BQ96JP2 1530 aa40.86■■■■■ 4.13
MRPL40-201ENST00000333130 DCAF1Q9Y4B6 1507 aa40.76■■■■■ 4.12
MRPL40-201ENST00000333130 UNC13AQ9UPW8 1703 aa40.1■■■■■ 4.01
MRPL40-201ENST00000333130 SCRIBQ14160 1630 aa39.88■■■■□ 3.97
MRPL40-201ENST00000333130 BICRAQ9NZM4 1560 aa39.66■■■■□ 3.94
MRPL40-201ENST00000333130 PABPN1Q86U42 306 aaKnown RBP eCLIP39.62■■■■□ 3.93
MRPL40-201ENST00000333130 SHROOM4Q9ULL8 1493 aa39.42■■■■□ 3.9
MRPL40-201ENST00000333130 EIF4G1Q04637 1599 aaKnown RBP38.66■■■■□ 3.78
MRPL40-201ENST00000333130 DNAJC5BQ9UF47 199 aa38.53■■■■□ 3.76
MRPL40-201ENST00000333130 CC2D2AQ9P2K1 1620 aa38.44■■■■□ 3.74
MRPL40-201ENST00000333130 CECR2Q9BXF3 1484 aa38.21■■■■□ 3.71
MRPL40-201ENST00000333130 BAZ1AQ9NRL2 1556 aaPredicted RBP38.19■■■■□ 3.7
MRPL40-201ENST00000333130 SMARCA4P51532 1647 aa38.17■■■■□ 3.7
MRPL40-201ENST00000333130 SMARCA2P51531 1590 aa37.91■■■■□ 3.66
MRPL40-201ENST00000333130 MROH2BQ7Z745 1585 aa37.88■■■■□ 3.65
MRPL40-201ENST00000333130 ATAD2BQ9ULI0 1458 aa37.83■■■■□ 3.65
MRPL40-201ENST00000333130 PEG3Q9GZU2 1588 aa37.78■■■■□ 3.64
MRPL40-201ENST00000333130 NCAPD3P42695 1498 aa37.78■■■■□ 3.64
MRPL40-201ENST00000333130 HMGXB3Q12766 1538 aa37.7■■■■□ 3.63
MRPL40-201ENST00000333130 BAZ1BQ9UIG0 1483 aaKnown RBP37.61■■■■□ 3.61
MRPL40-201ENST00000333130 WIZO95785 1651 aa37.54■■■■□ 3.6
MRPL40-201ENST00000333130 RSF1Q96T23 1441 aaPredicted RBP37.53■■■■□ 3.6
MRPL40-201ENST00000333130 TOP2AP11388 1531 aaKnown RBP37.19■■■■□ 3.54
MRPL40-201ENST00000333130 LAMC3Q9Y6N6 1575 aa36.84■■■■□ 3.49
MRPL40-201ENST00000333130 SUPT5HO00267 1087 aaKnown RBP36.79■■■■□ 3.48
MRPL40-201ENST00000333130 NESP48681 1621 aa36.75■■■■□ 3.47
MRPL40-201ENST00000333130 CADPSQ9ULU8 1353 aa36.69■■■■□ 3.46
MRPL40-201ENST00000333130 CCDC88BA6NC98 1476 aa36.67■■■■□ 3.46
MRPL40-201ENST00000333130 ERCC6Q03468 1493 aa36.66■■■■□ 3.46
MRPL40-201ENST00000333130 PDS5BQ9NTI5 1447 aa36.56■■■■□ 3.44
MRPL40-201ENST00000333130 CFTRP13569 1480 aa36.53■■■■□ 3.44
MRPL40-201ENST00000333130 PRDM2Q13029 1718 aa36.48■■■■□ 3.43
MRPL40-201ENST00000333130 KIF21AQ7Z4S6 1674 aa36.45■■■■□ 3.43
MRPL40-201ENST00000333130 FANCD2Q9BXW9 1451 aa36.31■■■■□ 3.4
MRPL40-201ENST00000333130 CEP164Q9UPV0 1460 aa36.29■■■■□ 3.4
MRPL40-201ENST00000333130 THOC2Q8NI27 1593 aaKnown RBP36.23■■■■□ 3.39
MRPL40-201ENST00000333130 CUX2O14529 1486 aa36.16■■■■□ 3.38
MRPL40-201ENST00000333130 MRC2Q9UBG0 1479 aa36.15■■■■□ 3.38
MRPL40-201ENST00000333130 WDR62O43379 1518 aa36.02■■■■□ 3.36
MRPL40-201ENST00000333130 URB2Q14146 1524 aaKnown RBP35.88■■■■□ 3.33
MRPL40-201ENST00000333130 ABCC8Q09428 1581 aa35.84■■■■□ 3.33
MRPL40-201ENST00000333130 DNMBPQ6XZF7 1577 aa35.78■■■■□ 3.32
MRPL40-201ENST00000333130 TOPBP1Q92547 1522 aa35.75■■■■□ 3.31
MRPL40-201ENST00000333130 CUX1P39880 1505 aa35.55■■■■□ 3.28
MRPL40-201ENST00000333130 IFT140Q96RY7 1462 aa35.49■■■■□ 3.27
MRPL40-201ENST00000333130 POLA1P09884 1462 aaPredicted RBP35.45■■■■□ 3.27
MRPL40-201ENST00000333130 WRNQ14191 1432 aaPredicted RBP eCLIP35.45■■■■□ 3.27
MRPL40-201ENST00000333130 FGD5Q6ZNL6 1462 aa35.41■■■■□ 3.26
MRPL40-201ENST00000333130 BIVM-ERCC5R4GMW8 1640 aa35.39■■■■□ 3.26
MRPL40-201ENST00000333130 TOP2BQ02880 1626 aa35.37■■■■□ 3.25
MRPL40-201ENST00000333130 TARBP1Q13395 1621 aaKnown RBP35.34■■■■□ 3.25
MRPL40-201ENST00000333130 SYNJ1O43426 1573 aa35.33■■■■□ 3.25
MRPL40-201ENST00000333130 SOGA1O94964 1423 aa35.31■■■■□ 3.24
MRPL40-201ENST00000333130 RAD54L2Q9Y4B4 1467 aa35.24■■■■□ 3.23
MRPL40-201ENST00000333130 ZNF608Q9ULD9 1512 aaPredicted RBP35.21■■■■□ 3.23
MRPL40-201ENST00000333130 EIF4G3O43432 1585 aaKnown RBP35.21■■■■□ 3.23
MRPL40-201ENST00000333130 WDR97A6NE52 1622 aa35.2■■■■□ 3.23
MRPL40-201ENST00000333130 ABCA10Q8WWZ4 1543 aa35.09■■■■□ 3.21
MRPL40-201ENST00000333130 AQRO60306 1485 aaKnown RBP eCLIP35.06■■■■□ 3.23e-10■■■■■ 43
MRPL40-201ENST00000333130 TDRD9Q8NDG6 1382 aaKnown RBP35.03■■■■□ 3.2
MRPL40-201ENST00000333130 ABCA5Q8WWZ7 1642 aa34.96■■■■□ 3.19
MRPL40-201ENST00000333130 GAPVD1Q14C86 1478 aa34.94■■■■□ 3.18
MRPL40-201ENST00000333130 PBRM1Q86U86 1689 aa34.93■■■■□ 3.18
MRPL40-201ENST00000333130 GRIN2BQ13224 1484 aa34.91■■■■□ 3.18
MRPL40-201ENST00000333130 MAGI1Q96QZ7 1491 aaPredicted RBP34.82■■■■□ 3.16
MRPL40-201ENST00000333130 SNAPC4Q5SXM2 1469 aa34.8■■■■□ 3.16
MRPL40-201ENST00000333130 TRIM41Q8WV44 630 aa34.79■■■■□ 3.16
MRPL40-201ENST00000333130 CHD1O14646 1710 aa34.74■■■■□ 3.15
MRPL40-201ENST00000333130 ERICH3Q5RHP9 1530 aa34.72■■■■□ 3.15
MRPL40-201ENST00000333130 KIF27Q86VH2 1401 aa34.72■■■■□ 3.15
MRPL40-201ENST00000333130 FBLN2P98095 1184 aa34.65■■■■□ 3.14
MRPL40-201ENST00000333130 SYNJ2O15056 1496 aa34.65■■■■□ 3.14
MRPL40-201ENST00000333130 OSCARQ8IYS5 282 aa34.64■■■■□ 3.14
MRPL40-201ENST00000333130 CHIC1Q5VXU3 224 aa34.62■■■■□ 3.13
MRPL40-201ENST00000333130 DNAJC5Q9H3Z4 198 aa34.62■■■■□ 3.13
MRPL40-201ENST00000333130 ADAMTS12P58397 1594 aa34.61■■■■□ 3.13
MRPL40-201ENST00000333130 CHMP7Q8WUX9 453 aaPredicted RBP34.61■■■■□ 3.13
MRPL40-201ENST00000333130 FHAD1B1AJZ9 1412 aa34.54■■■■□ 3.12
MRPL40-201ENST00000333130 CUL7Q14999 1698 aa34.52■■■■□ 3.12
MRPL40-201ENST00000333130 GRIN2AQ12879 1464 aa34.45■■■■□ 3.11
MRPL40-201ENST00000333130 IGF1RP08069 1367 aa34.44■■■■□ 3.1
MRPL40-201ENST00000333130 RUSC2Q8N2Y8 1516 aa34.34■■■■□ 3.09
MRPL40-201ENST00000333130 CARMIL1Q5VZK9 1371 aa34.3■■■■□ 3.08
MRPL40-201ENST00000333130 CLASP1Q7Z460 1538 aa34.29■■■■□ 3.08
MRPL40-201ENST00000333130 EEA1Q15075 1411 aa34.27■■■■□ 3.08
MRPL40-201ENST00000333130 NUP160Q12769 1436 aa34.25■■■■□ 3.07
MRPL40-201ENST00000333130 CEP170Q5SW79 1584 aa34.24■■■■□ 3.07
MRPL40-201ENST00000333130 RAPGEF2Q9Y4G8 1499 aa34.16■■■■□ 3.06
MRPL40-201ENST00000333130 ARHGEF11O15085 1522 aa34.1■■■■□ 3.05
MRPL40-201ENST00000333130 RIMBP3CA6NJZ7 1639 aa34.09■■■■□ 3.05
MRPL40-201ENST00000333130 RIMBP3BA6NNM3 1639 aa34.09■■■■□ 3.05
MRPL40-201ENST00000333130 RIMBP3Q9UFD9 1639 aa34.09■■■■□ 3.05
MRPL40-201ENST00000333130 CSRNP3Q8WYN3 585 aa34.08■■■■□ 3.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms