Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC17.48■□□□□ 0.39
ABCA4P78363 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ABCA4P78363 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ABCA4P78363 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
ABCA4P78363 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ABCA4P78363 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ABCA4P78363 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
ABCA4P78363 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
ABCA4P78363 AP003071.4-201ENST00000562276 1284 ntBASIC17.47■□□□□ 0.39
ABCA4P78363 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ABCA4P78363 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ABCA4P78363 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
ABCA4P78363 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
ABCA4P78363 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC17.47■□□□□ 0.39
ABCA4P78363 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC17.47■□□□□ 0.39
ABCA4P78363 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ABCA4P78363 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
ABCA4P78363 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
ABCA4P78363 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
ABCA4P78363 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC17.47■□□□□ 0.39
ABCA4P78363 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC17.47■□□□□ 0.39
ABCA4P78363 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
ABCA4P78363 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
ABCA4P78363 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC17.47■□□□□ 0.39
ABCA4P78363 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
ABCA4P78363 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC17.47■□□□□ 0.39
ABCA4P78363 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC17.47■□□□□ 0.39
ABCA4P78363 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
ABCA4P78363 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
ABCA4P78363 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.46■□□□□ 0.39
ABCA4P78363 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC17.46■□□□□ 0.39
ABCA4P78363 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
ABCA4P78363 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC17.46■□□□□ 0.39
ABCA4P78363 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC17.46■□□□□ 0.39
ABCA4P78363 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
ABCA4P78363 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
ABCA4P78363 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
ABCA4P78363 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ABCA4P78363 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ABCA4P78363 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
ABCA4P78363 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
ABCA4P78363 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ABCA4P78363 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
ABCA4P78363 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
ABCA4P78363 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ABCA4P78363 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ABCA4P78363 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC17.46■□□□□ 0.39
ABCA4P78363 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ABCA4P78363 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
ABCA4P78363 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.38
ABCA4P78363 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC17.46■□□□□ 0.38
ABCA4P78363 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.38
ABCA4P78363 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
ABCA4P78363 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ABCA4P78363 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC17.45■□□□□ 0.38
ABCA4P78363 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ABCA4P78363 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ABCA4P78363 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
ABCA4P78363 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC17.45■□□□□ 0.38
ABCA4P78363 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ABCA4P78363 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ABCA4P78363 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ABCA4P78363 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ABCA4P78363 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC17.45■□□□□ 0.38
ABCA4P78363 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC17.45■□□□□ 0.38
ABCA4P78363 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ABCA4P78363 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
ABCA4P78363 BRWD1-AS2-201ENST00000603064 1028 ntBASIC17.45■□□□□ 0.38
ABCA4P78363 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
ABCA4P78363 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
ABCA4P78363 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ABCA4P78363 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
ABCA4P78363 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ABCA4P78363 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ABCA4P78363 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ABCA4P78363 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC17.45■□□□□ 0.38
ABCA4P78363 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
ABCA4P78363 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.45■□□□□ 0.38
ABCA4P78363 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC17.45■□□□□ 0.38
ABCA4P78363 NUDT16P1-203ENST00000513809 620 ntBASIC17.45■□□□□ 0.38
ABCA4P78363 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
ABCA4P78363 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ABCA4P78363 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ABCA4P78363 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
ABCA4P78363 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC17.45■□□□□ 0.38
ABCA4P78363 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC17.44■□□□□ 0.38
ABCA4P78363 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC17.44■□□□□ 0.38
ABCA4P78363 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC17.44■□□□□ 0.38
ABCA4P78363 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC17.44■□□□□ 0.38
ABCA4P78363 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC17.44■□□□□ 0.38
ABCA4P78363 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC17.44■□□□□ 0.38
ABCA4P78363 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.44■□□□□ 0.38
ABCA4P78363 GUSBP5-202ENST00000510805 1989 ntBASIC17.44■□□□□ 0.38
ABCA4P78363 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
ABCA4P78363 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC17.44■□□□□ 0.38
ABCA4P78363 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ABCA4P78363 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ABCA4P78363 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ABCA4P78363 PRKY-204ENST00000533551 1019 ntBASIC17.44■□□□□ 0.38
ABCA4P78363 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 421.9 ms