Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.69■□□□□ 0.74
LSM1O15116 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LSM1O15116 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
LSM1O15116 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
LSM1O15116 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.68■□□□□ 0.74
LSM1O15116 AC116050.2-201ENST00000612102 1779 ntBASIC19.68■□□□□ 0.74
LSM1O15116 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LSM1O15116 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LSM1O15116 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.68■□□□□ 0.74
LSM1O15116 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LSM1O15116 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.68■□□□□ 0.74
LSM1O15116 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
LSM1O15116 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC19.68■□□□□ 0.74
LSM1O15116 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LSM1O15116 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.68■□□□□ 0.74
LSM1O15116 AP001160.3-201ENST00000601484 763 ntBASIC19.68■□□□□ 0.74
LSM1O15116 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LSM1O15116 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
LSM1O15116 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LSM1O15116 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.68■□□□□ 0.74
LSM1O15116 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
LSM1O15116 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LSM1O15116 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LSM1O15116 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LSM1O15116 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.67■□□□□ 0.74
LSM1O15116 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.67■□□□□ 0.74
LSM1O15116 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.67■□□□□ 0.74
LSM1O15116 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LSM1O15116 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
LSM1O15116 JTB-203ENST00000368589 1216 ntTSL 2 BASIC19.67■□□□□ 0.74
LSM1O15116 MIR638-201ENST00000385237 100 ntBASIC19.67■□□□□ 0.74
LSM1O15116 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.67■□□□□ 0.74
LSM1O15116 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
LSM1O15116 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.67■□□□□ 0.74
LSM1O15116 AC123595.1-201ENST00000440769 1046 ntBASIC19.67■□□□□ 0.74
LSM1O15116 TERF1P2-201ENST00000583350 1212 ntBASIC19.67■□□□□ 0.74
LSM1O15116 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
LSM1O15116 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LSM1O15116 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LSM1O15116 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LSM1O15116 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LSM1O15116 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.66■□□□□ 0.74
LSM1O15116 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LSM1O15116 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
LSM1O15116 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LSM1O15116 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
LSM1O15116 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
LSM1O15116 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LSM1O15116 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LSM1O15116 MIR2861-201ENST00000636310 90 ntBASIC19.66■□□□□ 0.74
LSM1O15116 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LSM1O15116 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LSM1O15116 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LSM1O15116 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.66■□□□□ 0.74
LSM1O15116 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.66■□□□□ 0.74
LSM1O15116 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LSM1O15116 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
LSM1O15116 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
LSM1O15116 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
LSM1O15116 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
LSM1O15116 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.65■□□□□ 0.74
LSM1O15116 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LSM1O15116 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
LSM1O15116 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LSM1O15116 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
LSM1O15116 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LSM1O15116 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
LSM1O15116 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.65■□□□□ 0.74
LSM1O15116 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC19.65■□□□□ 0.74
LSM1O15116 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LSM1O15116 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
LSM1O15116 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.74
LSM1O15116 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LSM1O15116 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LSM1O15116 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LSM1O15116 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LSM1O15116 YBX1P1-201ENST00000445822 960 ntBASIC19.64■□□□□ 0.73
LSM1O15116 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC19.64■□□□□ 0.73
LSM1O15116 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.64■□□□□ 0.73
LSM1O15116 CCDC92B-201ENST00000575506 885 ntBASIC19.64■□□□□ 0.73
LSM1O15116 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LSM1O15116 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
LSM1O15116 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LSM1O15116 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LSM1O15116 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LSM1O15116 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LSM1O15116 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LSM1O15116 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LSM1O15116 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LSM1O15116 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LSM1O15116 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.63■□□□□ 0.73
LSM1O15116 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.63■□□□□ 0.73
LSM1O15116 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LSM1O15116 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.63■□□□□ 0.73
LSM1O15116 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LSM1O15116 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
LSM1O15116 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LSM1O15116 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LSM1O15116 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LSM1O15116 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms