RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 PELP1Q8IZL8 1130 aaKnown RBP31.99■■■□□ 2.71
HDAC4-215ENST00000543185 DCAF8L2P0C7V8 631 aa31.02■■■□□ 2.56
HDAC4-215ENST00000543185 MYT1Q01538 1121 aa30.87■■■□□ 2.53
HDAC4-215ENST00000543185 CCER1Q8TC90 406 aaPredicted RBP30.36■■■□□ 2.45
HDAC4-215ENST00000543185 ERICH6Q7L0X2 663 aa30.1■■■□□ 2.41
HDAC4-215ENST00000543185 SUPT5HO00267 1087 aaKnown RBP30.1■■■□□ 2.41
HDAC4-215ENST00000543185 CENPBP07199 599 aaPredicted RBP30.07■■■□□ 2.4
HDAC4-215ENST00000543185 APLP2Q06481 763 aa29.87■■■□□ 2.37
HDAC4-215ENST00000543185 ZEB1P37275 1124 aaPredicted RBP29.8■■■□□ 2.36
HDAC4-215ENST00000543185 NISCHQ9Y2I1 1504 aa29.79■■■□□ 2.36
HDAC4-215ENST00000543185 FAM9AQ8IZU1 332 aaPredicted RBP29.41■■■□□ 2.3
HDAC4-215ENST00000543185 NEFLP07196 543 aa29.33■■■□□ 2.29
HDAC4-215ENST00000543185 YTHDC1Q96MU7 727 aaKnown RBP29.3■■■□□ 2.28
HDAC4-215ENST00000543185 SHROOM4Q9ULL8 1493 aa29.17■■■□□ 2.26
HDAC4-215ENST00000543185 PCGF6Q9BYE7 350 aa29.14■■■□□ 2.26
HDAC4-215ENST00000543185 EHMT2Q96KQ7 1210 aa28.91■■■□□ 2.22
HDAC4-215ENST00000543185 DAXXQ9UER7 740 aaPredicted RBP28.76■■■□□ 2.19
HDAC4-215ENST00000543185 TTBK1Q5TCY1 1321 aaPredicted RBP28.73■■■□□ 2.19
HDAC4-215ENST00000543185 RTL5Q5HYW3 569 aaPredicted RBP28.24■■■□□ 2.11
HDAC4-215ENST00000543185 TRIM41Q8WV44 630 aa28.22■■■□□ 2.11
HDAC4-215ENST00000543185 TRIM26Q12899 539 aaPredicted RBP28.11■■■□□ 2.09
HDAC4-215ENST00000543185 ZNF316A6NFI3 1004 aaPredicted RBP28.01■■■□□ 2.07
HDAC4-215ENST00000543185 UBTFP17480 764 aaKnown RBP27.98■■■□□ 2.07
HDAC4-215ENST00000543185 HRCP23327 699 aa27.93■■■□□ 2.06
HDAC4-215ENST00000543185 ATP1B4Q9UN42 357 aaPredicted RBP27.81■■■□□ 2.04
HDAC4-215ENST00000543185 RANGAP1P46060 587 aaPredicted RBP27.7■■■□□ 2.03
HDAC4-215ENST00000543185 CLSPNQ9HAW4 1339 aa27.51■■□□□ 1.99
HDAC4-215ENST00000543185 DIEXFQ68CQ4 756 aaKnown RBP27.41■■□□□ 1.98
HDAC4-215ENST00000543185 GLIPR1L2Q4G1C9 344 aa27.35■■□□□ 1.97
HDAC4-215ENST00000543185 MYT1LQ9UL68 1186 aa27.29■■□□□ 1.96
HDAC4-215ENST00000543185 CDK11AQ9UQ88 783 aaPredicted RBP27.27■■□□□ 1.96
HDAC4-215ENST00000543185 POLR3GLQ9BT43 218 aa27.17■■□□□ 1.94
HDAC4-215ENST00000543185 ANP32AP39687 249 aaKnown RBP27.05■■□□□ 1.92
HDAC4-215ENST00000543185 ZBTB47Q9UFB7 747 aaPredicted RBP27.03■■□□□ 1.92
HDAC4-215ENST00000543185 ANP32BQ92688 251 aaKnown RBP27.02■■□□□ 1.92
HDAC4-215ENST00000543185 PPARGC1BQ86YN6 1023 aaKnown RBP26.96■■□□□ 1.91
HDAC4-215ENST00000543185 GTF3C3Q9Y5Q9 886 aa26.94■■□□□ 1.9
HDAC4-215ENST00000543185 ITGAEP38570 1179 aa26.91■■□□□ 1.9
HDAC4-215ENST00000543185 ANP32CO43423 234 aa26.9■■□□□ 1.9
HDAC4-215ENST00000543185 HNRNPUL2Q1KMD3 747 aaKnown RBP26.84■■□□□ 1.89
HDAC4-215ENST00000543185 SLC4A1APQ9BWU0 796 aaKnown RBP26.77■■□□□ 1.88
HDAC4-215ENST00000543185 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.75■■□□□ 1.87
HDAC4-215ENST00000543185 EIF5BO60841 1220 aaKnown RBP26.66■■□□□ 1.86
HDAC4-215ENST00000543185 CANXP27824 592 aaKnown RBP26.65■■□□□ 1.86
HDAC4-215ENST00000543185 ACIN1Q9UKV3 1341 aaKnown RBP26.6■■□□□ 1.85
HDAC4-215ENST00000543185 UPF2Q9HAU5 1272 aaKnown RBP26.56■■□□□ 1.84
HDAC4-215ENST00000543185 CHIC1Q5VXU3 224 aa26.56■■□□□ 1.84
HDAC4-215ENST00000543185 BCANQ96GW7 911 aa26.56■■□□□ 1.84
HDAC4-215ENST00000543185 CNGB1Q14028 1251 aaPredicted RBP26.55■■□□□ 1.84
HDAC4-215ENST00000543185 NEFMP07197 916 aa26.52■■□□□ 1.84
HDAC4-215ENST00000543185 HSP90AA1P07900 732 aaKnown RBP26.47■■□□□ 1.83
HDAC4-215ENST00000543185 LOC105371045A0A1W2PR82 267 aa26.45■■□□□ 1.82
HDAC4-215ENST00000543185 FAM50AQ14320 339 aaKnown RBP26.41■■□□□ 1.82
HDAC4-215ENST00000543185 TRIM52Q96A61 297 aa26.31■■□□□ 1.8
HDAC4-215ENST00000543185 NEUROD1Q13562 356 aa26.25■■□□□ 1.79
HDAC4-215ENST00000543185 ANP32EQ9BTT0 268 aa26.25■■□□□ 1.79
HDAC4-215ENST00000543185 TNNT2P45379 298 aaPredicted RBP26.24■■□□□ 1.79
HDAC4-215ENST00000543185 NPM2Q86SE8 214 aaKnown RBP26.16■■□□□ 1.78
HDAC4-215ENST00000543185 DCAF1Q9Y4B6 1507 aa26.1■■□□□ 1.77
HDAC4-215ENST00000543185 ZNF326Q5BKZ1 582 aaKnown RBP26.04■■□□□ 1.76
HDAC4-215ENST00000543185 GOLGA6L2Q8N9W4 650 aaPredicted RBP26.03■■□□□ 1.76
HDAC4-215ENST00000543185 FKBP8Q14318 412 aa25.99■■□□□ 1.75
HDAC4-215ENST00000543185 DDRGK1Q96HY6 314 aa25.97■■□□□ 1.75
HDAC4-215ENST00000543185 TRIM44Q96DX7 344 aaPredicted RBP25.94■■□□□ 1.74
HDAC4-215ENST00000543185 BECN1Q14457 450 aa25.93■■□□□ 1.74
HDAC4-215ENST00000543185 CCDC180Q9P1Z9 1646 aa25.92■■□□□ 1.74
HDAC4-215ENST00000543185 SLC24A1O60721 1099 aa25.91■■□□□ 1.74
HDAC4-215ENST00000543185 TONSLQ96HA7 1378 aa25.91■■□□□ 1.74
HDAC4-215ENST00000543185 CCDC136Q96JN2 1154 aa25.9■■□□□ 1.74
HDAC4-215ENST00000543185 NBR1Q14596 966 aa25.89■■□□□ 1.74
HDAC4-215ENST00000543185 CDK11BP21127 795 aaKnown RBP25.88■■□□□ 1.73
HDAC4-215ENST00000543185 GOLGA6L22H0YM25 854 aa25.84■■□□□ 1.73
HDAC4-215ENST00000543185 ERICH6BQ5W0A0 696 aa25.82■■□□□ 1.72
HDAC4-215ENST00000543185 HNRNPUQ00839 825 aaKnown RBP eCLIP25.81■■□□□ 1.72
HDAC4-215ENST00000543185 BCL11AQ9H165 835 aa25.78■■□□□ 1.72
HDAC4-215ENST00000543185 MYH16Q9H6N6 1097 aa25.75■■□□□ 1.71
HDAC4-215ENST00000543185 NCLP19338 710 aaKnown RBP25.71■■□□□ 1.71
HDAC4-215ENST00000543185 TMC1Q8TDI8 760 aa25.59■■□□□ 1.69
HDAC4-215ENST00000543185 PPM1GO15355 546 aaPredicted RBP25.56■■□□□ 1.68
HDAC4-215ENST00000543185 ZRSR1Q15695 479 aaKnown RBP25.53■■□□□ 1.68
HDAC4-215ENST00000543185 WDR43Q15061 677 aaKnown RBP eCLIP25.52■■□□□ 1.68
HDAC4-215ENST00000543185 ARXQ96QS3 562 aa25.52■■□□□ 1.68
HDAC4-215ENST00000543185 GOLGA6L6A8MZA4 724 aa25.49■■□□□ 1.67
HDAC4-215ENST00000543185 CASC1Q6TDU7 716 aa25.48■■□□□ 1.67
HDAC4-215ENST00000543185 FAM9BQ8IZU0 186 aa25.48■■□□□ 1.67
HDAC4-215ENST00000543185 PTMAP06454 111 aaKnown RBP25.47■■□□□ 1.67
HDAC4-215ENST00000543185 DNTTIP2Q5QJE6 756 aaKnown RBP25.44■■□□□ 1.66
HDAC4-215ENST00000543185 SCAF1Q9H7N4 1312 aaKnown RBP25.42■■□□□ 1.66
HDAC4-215ENST00000543185 CHAF1AQ13111 956 aaPredicted RBP25.41■■□□□ 1.66
HDAC4-215ENST00000543185 NRDCO43847 1150 aa25.4■■□□□ 1.66
HDAC4-215ENST00000543185 NAP1L5Q96NT1 182 aaPredicted RBP25.38■■□□□ 1.65
HDAC4-215ENST00000543185 MRS2Q9HD23 443 aa25.37■■□□□ 1.65
HDAC4-215ENST00000543185 DDX10Q13206 875 aaKnown RBP25.34■■□□□ 1.65
HDAC4-215ENST00000543185 CSRNP3Q8WYN3 585 aa25.27■■□□□ 1.64
HDAC4-215ENST00000543185 L1TD1Q5T7N2 865 aaKnown RBP25.25■■□□□ 1.63
HDAC4-215ENST00000543185 NOP58Q9Y2X3 529 aaKnown RBP25.24■■□□□ 1.63
HDAC4-215ENST00000543185 CHMP4BQ9H444 224 aaKnown RBP25.23■■□□□ 1.63
HDAC4-215ENST00000543185 ESF1Q9H501 851 aaKnown RBP25.2■■□□□ 1.63
HDAC4-215ENST00000543185 PTMSP20962 102 aa25.16■■□□□ 1.62
HDAC4-215ENST00000543185 MSNP26038 577 aaKnown RBP25.15■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 115 ms