RNA–Protein interactions for RNA: ENST00000260563.4

RTCA-201, Transcript of RNA 3'-terminal phosphate cyclase, humanhuman

TSL 1 (best) BASIC

Gene RTCA, Length 1,534 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTCA-201ENST00000260563 NISCHQ9Y2I1 1504 aa49.26■■■■■ 5.48
RTCA-201ENST00000260563 CCDC180Q9P1Z9 1646 aa43.69■■■■■ 4.58
RTCA-201ENST00000260563 ABCC9O60706 1549 aa42.09■■■■■ 4.33
RTCA-201ENST00000260563 ZCCHC6Q5VYS8 1495 aaKnown RBP41.19■■■■■ 4.18
RTCA-201ENST00000260563 NACADO15069 1562 aa40.85■■■■■ 4.13
RTCA-201ENST00000260563 DCAF8L2P0C7V8 631 aa40.83■■■■■ 4.13
RTCA-201ENST00000260563 DCAF1Q9Y4B6 1507 aa40.8■■■■■ 4.12
RTCA-201ENST00000260563 RB1CC1Q8TDY2 1594 aa40.79■■■■■ 4.12
RTCA-201ENST00000260563 MYO15BQ96JP2 1530 aa40.76■■■■■ 4.12
RTCA-201ENST00000260563 UNC13AQ9UPW8 1703 aa40■■■■□ 3.99
RTCA-201ENST00000260563 SCRIBQ14160 1630 aa39.86■■■■□ 3.97
RTCA-201ENST00000260563 BICRAQ9NZM4 1560 aa39.51■■■■□ 3.91
RTCA-201ENST00000260563 PABPN1Q86U42 306 aaKnown RBP eCLIP39.33■■■■□ 3.89
RTCA-201ENST00000260563 SHROOM4Q9ULL8 1493 aa39.21■■■■□ 3.87
RTCA-201ENST00000260563 EIF4G1Q04637 1599 aaKnown RBP38.44■■■■□ 3.74
RTCA-201ENST00000260563 CECR2Q9BXF3 1484 aa38.27■■■■□ 3.72
RTCA-201ENST00000260563 BAZ1AQ9NRL2 1556 aaPredicted RBP38.19■■■■□ 3.7
RTCA-201ENST00000260563 SMARCA4P51532 1647 aa38.18■■■■□ 3.7
RTCA-201ENST00000260563 CC2D2AQ9P2K1 1620 aa38.16■■■■□ 3.7
RTCA-201ENST00000260563 DNAJC5BQ9UF47 199 aa37.98■■■■□ 3.67
RTCA-201ENST00000260563 MROH2BQ7Z745 1585 aa37.97■■■■□ 3.67
RTCA-201ENST00000260563 SMARCA2P51531 1590 aa37.79■■■■□ 3.64
RTCA-201ENST00000260563 PEG3Q9GZU2 1588 aa37.77■■■■□ 3.64
RTCA-201ENST00000260563 ATAD2BQ9ULI0 1458 aa37.74■■■■□ 3.63
RTCA-201ENST00000260563 RSF1Q96T23 1441 aaPredicted RBP37.69■■■■□ 3.62
RTCA-201ENST00000260563 WIZO95785 1651 aa37.66■■■■□ 3.62
RTCA-201ENST00000260563 NCAPD3P42695 1498 aa37.61■■■■□ 3.61
RTCA-201ENST00000260563 HMGXB3Q12766 1538 aa37.58■■■■□ 3.61
RTCA-201ENST00000260563 BAZ1BQ9UIG0 1483 aaKnown RBP37.51■■■■□ 3.59
RTCA-201ENST00000260563 TOP2AP11388 1531 aaKnown RBP37.28■■■■□ 3.56
RTCA-201ENST00000260563 SUPT5HO00267 1087 aaKnown RBP37.11■■■■□ 3.53
RTCA-201ENST00000260563 CCDC88BA6NC98 1476 aa36.76■■■■□ 3.48
RTCA-201ENST00000260563 LAMC3Q9Y6N6 1575 aa36.64■■■■□ 3.46
RTCA-201ENST00000260563 NESP48681 1621 aa36.58■■■■□ 3.45
RTCA-201ENST00000260563 CADPSQ9ULU8 1353 aa36.54■■■■□ 3.44
RTCA-201ENST00000260563 PRDM2Q13029 1718 aa36.48■■■■□ 3.43
RTCA-201ENST00000260563 CFTRP13569 1480 aa36.47■■■■□ 3.43
RTCA-201ENST00000260563 KIF21AQ7Z4S6 1674 aa36.31■■■■□ 3.4
RTCA-201ENST00000260563 PDS5BQ9NTI5 1447 aa36.3■■■■□ 3.4
RTCA-201ENST00000260563 ERCC6Q03468 1493 aa36.27■■■■□ 3.4
RTCA-201ENST00000260563 FANCD2Q9BXW9 1451 aa36.17■■■■□ 3.38
RTCA-201ENST00000260563 CEP164Q9UPV0 1460 aa36.11■■■■□ 3.37
RTCA-201ENST00000260563 THOC2Q8NI27 1593 aaKnown RBP36.01■■■■□ 3.35
RTCA-201ENST00000260563 MRC2Q9UBG0 1479 aa35.93■■■■□ 3.34
RTCA-201ENST00000260563 WDR62O43379 1518 aa35.82■■■■□ 3.33
RTCA-201ENST00000260563 URB2Q14146 1524 aaKnown RBP35.78■■■■□ 3.32
RTCA-201ENST00000260563 DNMBPQ6XZF7 1577 aa35.72■■■■□ 3.31
RTCA-201ENST00000260563 ABCC8Q09428 1581 aa35.69■■■■□ 3.3
RTCA-201ENST00000260563 CUX2O14529 1486 aa35.67■■■■□ 3.3
RTCA-201ENST00000260563 TOPBP1Q92547 1522 aa35.67■■■■□ 3.3
RTCA-201ENST00000260563 CUX1P39880 1505 aa35.6■■■■□ 3.29
RTCA-201ENST00000260563 WRNQ14191 1432 aaPredicted RBP eCLIP35.56■■■■□ 3.28
RTCA-201ENST00000260563 BIVM-ERCC5R4GMW8 1640 aa35.53■■■■□ 3.28
RTCA-201ENST00000260563 SYNJ1O43426 1573 aa35.51■■■■□ 3.27
RTCA-201ENST00000260563 TOP2BQ02880 1626 aa35.49■■■■□ 3.27
RTCA-201ENST00000260563 FGD5Q6ZNL6 1462 aa35.41■■■■□ 3.26
RTCA-201ENST00000260563 POLA1P09884 1462 aaPredicted RBP35.4■■■■□ 3.26
RTCA-201ENST00000260563 IFT140Q96RY7 1462 aa35.3■■■■□ 3.24
RTCA-201ENST00000260563 TARBP1Q13395 1621 aaKnown RBP35.27■■■■□ 3.24
RTCA-201ENST00000260563 SOGA1O94964 1423 aa35.21■■■■□ 3.23
RTCA-201ENST00000260563 RAD54L2Q9Y4B4 1467 aa35.21■■■■□ 3.23
RTCA-201ENST00000260563 WDR97A6NE52 1622 aa35.21■■■■□ 3.23
RTCA-201ENST00000260563 EIF4G3O43432 1585 aaKnown RBP35.08■■■■□ 3.21
RTCA-201ENST00000260563 ABCA10Q8WWZ4 1543 aa35.08■■■■□ 3.21
RTCA-201ENST00000260563 ZNF608Q9ULD9 1512 aaPredicted RBP35.07■■■■□ 3.2
RTCA-201ENST00000260563 TRIM41Q8WV44 630 aa35.03■■■■□ 3.2
RTCA-201ENST00000260563 ABCA5Q8WWZ7 1642 aa34.96■■■■□ 3.19
RTCA-201ENST00000260563 CHIC1Q5VXU3 224 aa34.93■■■■□ 3.18
RTCA-201ENST00000260563 TDRD9Q8NDG6 1382 aaKnown RBP34.93■■■■□ 3.18
RTCA-201ENST00000260563 AQRO60306 1485 aaKnown RBP eCLIP34.92■■■■□ 3.182e-11■■■■■ 27.9
RTCA-201ENST00000260563 PBRM1Q86U86 1689 aa34.91■■■■□ 3.18
RTCA-201ENST00000260563 GAPVD1Q14C86 1478 aa34.86■■■■□ 3.17
RTCA-201ENST00000260563 GRIN2BQ13224 1484 aa34.78■■■■□ 3.16
RTCA-201ENST00000260563 KIF27Q86VH2 1401 aa34.77■■■■□ 3.16
RTCA-201ENST00000260563 ERICH3Q5RHP9 1530 aa34.7■■■■□ 3.15
RTCA-201ENST00000260563 SNAPC4Q5SXM2 1469 aa34.68■■■■□ 3.14
RTCA-201ENST00000260563 MAGI1Q96QZ7 1491 aaPredicted RBP34.65■■■■□ 3.14
RTCA-201ENST00000260563 RUSC2Q8N2Y8 1516 aa34.6■■■■□ 3.13
RTCA-201ENST00000260563 ADAMTS12P58397 1594 aa34.59■■■■□ 3.13
RTCA-201ENST00000260563 CHD1O14646 1710 aa34.57■■■■□ 3.13
RTCA-201ENST00000260563 CUL7Q14999 1698 aa34.56■■■■□ 3.12
RTCA-201ENST00000260563 SYNJ2O15056 1496 aa34.49■■■■□ 3.11
RTCA-201ENST00000260563 IGF1RP08069 1367 aa34.48■■■■□ 3.11
RTCA-201ENST00000260563 EEA1Q15075 1411 aa34.48■■■■□ 3.11
RTCA-201ENST00000260563 FHAD1B1AJZ9 1412 aa34.46■■■■□ 3.11
RTCA-201ENST00000260563 FBLN2P98095 1184 aa34.38■■■■□ 3.09
RTCA-201ENST00000260563 CHMP7Q8WUX9 453 aaPredicted RBP34.36■■■■□ 3.09
RTCA-201ENST00000260563 GRIN2AQ12879 1464 aa34.35■■■■□ 3.09
RTCA-201ENST00000260563 CARMIL1Q5VZK9 1371 aa34.33■■■■□ 3.09
RTCA-201ENST00000260563 FAM9AQ8IZU1 332 aaPredicted RBP34.29■■■■□ 3.08
RTCA-201ENST00000260563 CSRNP3Q8WYN3 585 aa34.26■■■■□ 3.08
RTCA-201ENST00000260563 RAPGEF2Q9Y4G8 1499 aa34.23■■■■□ 3.07
RTCA-201ENST00000260563 PRXQ9BXM0 1461 aa34.23■■■■□ 3.07
RTCA-201ENST00000260563 OSCARQ8IYS5 282 aa34.19■■■■□ 3.06
RTCA-201ENST00000260563 CEP170Q5SW79 1584 aa34.19■■■■□ 3.06
RTCA-201ENST00000260563 KIF21BO75037 1637 aa34.16■■■■□ 3.06
RTCA-201ENST00000260563 NUP160Q12769 1436 aa34.14■■■■□ 3.06
RTCA-201ENST00000260563 CLASP1Q7Z460 1538 aa34.11■■■■□ 3.05
RTCA-201ENST00000260563 CTTNBP2Q8WZ74 1663 aa34.06■■■■□ 3.04
RTCA-201ENST00000260563 GOLGA3Q08378 1498 aa33.95■■■■□ 3.02
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms