Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC30.56■■■□□ 2.48
CTDP1Q9Y5B0 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
CTDP1Q9Y5B0 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
CTDP1Q9Y5B0 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
CTDP1Q9Y5B0 LINC01971-201ENST00000617888 1048 ntBASIC30.53■■■□□ 2.48
CTDP1Q9Y5B0 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
CTDP1Q9Y5B0 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
CTDP1Q9Y5B0 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
CTDP1Q9Y5B0 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
CTDP1Q9Y5B0 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC30.52■■■□□ 2.48
CTDP1Q9Y5B0 MACF1-219ENST00000484793 834 ntTSL 2 BASIC30.51■■■□□ 2.47
CTDP1Q9Y5B0 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
CTDP1Q9Y5B0 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
CTDP1Q9Y5B0 DUX4L11-201ENST00000611504 1267 ntBASIC30.49■■■□□ 2.47
CTDP1Q9Y5B0 DUX4L12-201ENST00000614593 1267 ntBASIC30.49■■■□□ 2.47
CTDP1Q9Y5B0 DUX4L14-201ENST00000621227 1267 ntBASIC30.49■■■□□ 2.47
CTDP1Q9Y5B0 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
CTDP1Q9Y5B0 EI24-212ENST00000615917 1407 ntTSL 2 BASIC30.48■■■□□ 2.47
CTDP1Q9Y5B0 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC30.48■■■□□ 2.47
CTDP1Q9Y5B0 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC30.47■■■□□ 2.47
CTDP1Q9Y5B0 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC30.47■■■□□ 2.47
CTDP1Q9Y5B0 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC30.47■■■□□ 2.47
CTDP1Q9Y5B0 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC30.47■■■□□ 2.47
CTDP1Q9Y5B0 RPS2-202ENST00000526522 924 ntTSL 2 BASIC30.47■■■□□ 2.47
CTDP1Q9Y5B0 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
CTDP1Q9Y5B0 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC30.46■■■□□ 2.47
CTDP1Q9Y5B0 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
CTDP1Q9Y5B0 AGPS-202ENST00000409888 815 ntTSL 4 BASIC30.45■■■□□ 2.47
CTDP1Q9Y5B0 GDI1-215ENST00000630693 786 ntTSL 4 BASIC30.45■■■□□ 2.47
CTDP1Q9Y5B0 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC30.44■■■□□ 2.46
CTDP1Q9Y5B0 MIR3648-2-201ENST00000581792 180 ntBASIC30.43■■■□□ 2.46
CTDP1Q9Y5B0 AC016575.1-201ENST00000607026 382 ntBASIC30.43■■■□□ 2.46
CTDP1Q9Y5B0 MIR3648-1-201ENST00000615959 180 ntBASIC30.43■■■□□ 2.46
CTDP1Q9Y5B0 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC30.42■■■□□ 2.46
CTDP1Q9Y5B0 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
CTDP1Q9Y5B0 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
CTDP1Q9Y5B0 MIR639-201ENST00000384974 98 ntBASIC30.41■■■□□ 2.46
CTDP1Q9Y5B0 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
CTDP1Q9Y5B0 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC30.4■■■□□ 2.46
CTDP1Q9Y5B0 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
CTDP1Q9Y5B0 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC30.38■■■□□ 2.45
CTDP1Q9Y5B0 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC30.37■■■□□ 2.45
CTDP1Q9Y5B0 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC30.36■■■□□ 2.45
CTDP1Q9Y5B0 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
CTDP1Q9Y5B0 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
CTDP1Q9Y5B0 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
CTDP1Q9Y5B0 MIR4449-201ENST00000578365 66 ntBASIC30.33■■■□□ 2.45
CTDP1Q9Y5B0 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC30.33■■■□□ 2.45
CTDP1Q9Y5B0 CR559946.2-201ENST00000623684 991 ntBASIC30.33■■■□□ 2.45
CTDP1Q9Y5B0 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
CTDP1Q9Y5B0 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC30.32■■■□□ 2.44
CTDP1Q9Y5B0 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
CTDP1Q9Y5B0 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
CTDP1Q9Y5B0 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
CTDP1Q9Y5B0 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
CTDP1Q9Y5B0 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
CTDP1Q9Y5B0 AC010864.1-201ENST00000609407 1511 ntBASIC30.3■■■□□ 2.44
CTDP1Q9Y5B0 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC30.29■■■□□ 2.44
CTDP1Q9Y5B0 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC30.29■■■□□ 2.44
CTDP1Q9Y5B0 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC30.29■■■□□ 2.44
CTDP1Q9Y5B0 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC30.29■■■□□ 2.44
CTDP1Q9Y5B0 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
CTDP1Q9Y5B0 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
CTDP1Q9Y5B0 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC30.28■■■□□ 2.44
CTDP1Q9Y5B0 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC30.28■■■□□ 2.44
CTDP1Q9Y5B0 CALM3-209ENST00000597743 577 ntTSL 4 BASIC30.28■■■□□ 2.44
CTDP1Q9Y5B0 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC30.27■■■□□ 2.44
CTDP1Q9Y5B0 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC30.26■■■□□ 2.43
CTDP1Q9Y5B0 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC30.25■■■□□ 2.43
CTDP1Q9Y5B0 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
CTDP1Q9Y5B0 DUX4L13-201ENST00000554103 1267 ntBASIC30.25■■■□□ 2.43
CTDP1Q9Y5B0 DUX4L15-201ENST00000611059 1267 ntBASIC30.25■■■□□ 2.43
CTDP1Q9Y5B0 DUX4L23-201ENST00000615195 1269 ntBASIC30.25■■■□□ 2.43
CTDP1Q9Y5B0 DUX4L24-201ENST00000617576 1269 ntBASIC30.25■■■□□ 2.43
CTDP1Q9Y5B0 DUX4L22-201ENST00000618238 1269 ntBASIC30.25■■■□□ 2.43
CTDP1Q9Y5B0 DUX4L20-201ENST00000619712 1269 ntBASIC30.25■■■□□ 2.43
CTDP1Q9Y5B0 DUX4L21-201ENST00000622058 1269 ntBASIC30.25■■■□□ 2.43
CTDP1Q9Y5B0 DUX4L10-201ENST00000622460 1267 ntBASIC30.25■■■□□ 2.43
CTDP1Q9Y5B0 DUX4L25-201ENST00000624915 1269 ntBASIC30.25■■■□□ 2.43
CTDP1Q9Y5B0 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC30.25■■■□□ 2.43
CTDP1Q9Y5B0 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
CTDP1Q9Y5B0 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC30.25■■■□□ 2.43
CTDP1Q9Y5B0 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC30.24■■■□□ 2.43
CTDP1Q9Y5B0 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC30.23■■■□□ 2.43
CTDP1Q9Y5B0 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
CTDP1Q9Y5B0 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC30.23■■■□□ 2.43
CTDP1Q9Y5B0 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
CTDP1Q9Y5B0 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
CTDP1Q9Y5B0 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
CTDP1Q9Y5B0 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
CTDP1Q9Y5B0 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
CTDP1Q9Y5B0 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
CTDP1Q9Y5B0 CHML-204ENST00000638121 920 ntTSL 2 BASIC30.21■■■□□ 2.43
CTDP1Q9Y5B0 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
CTDP1Q9Y5B0 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
CTDP1Q9Y5B0 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
CTDP1Q9Y5B0 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
CTDP1Q9Y5B0 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
CTDP1Q9Y5B0 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
CTDP1Q9Y5B0 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC30.19■■■□□ 2.42
Retrieved 100 of 98,524 protein–RNA pairs in 7.4 ms