Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC21.51■■□□□ 1.03
TRAV40A0A0B4J280 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
TRAV40A0A0B4J280 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
TRAV40A0A0B4J280 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
TRAV40A0A0B4J280 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TRAV40A0A0B4J280 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
TRAV40A0A0B4J280 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TRAV40A0A0B4J280 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
TRAV40A0A0B4J280 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
TRAV40A0A0B4J280 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC21.48■■□□□ 1.03
TRAV40A0A0B4J280 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
TRAV40A0A0B4J280 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TRAV40A0A0B4J280 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC21.47■■□□□ 1.03
TRAV40A0A0B4J280 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC21.47■■□□□ 1.03
TRAV40A0A0B4J280 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
TRAV40A0A0B4J280 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TRAV40A0A0B4J280 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TRAV40A0A0B4J280 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
TRAV40A0A0B4J280 RNF166-209ENST00000567844 633 ntTSL 5 BASIC21.44■■□□□ 1.02
TRAV40A0A0B4J280 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TRAV40A0A0B4J280 LINC01971-201ENST00000617888 1048 ntBASIC21.43■■□□□ 1.02
TRAV40A0A0B4J280 EI24-212ENST00000615917 1407 ntTSL 2 BASIC21.43■■□□□ 1.02
TRAV40A0A0B4J280 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TRAV40A0A0B4J280 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TRAV40A0A0B4J280 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
TRAV40A0A0B4J280 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRAV40A0A0B4J280 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
TRAV40A0A0B4J280 MACF1-219ENST00000484793 834 ntTSL 2 BASIC21.4■■□□□ 1.02
TRAV40A0A0B4J280 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRAV40A0A0B4J280 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC21.4■■□□□ 1.02
TRAV40A0A0B4J280 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
TRAV40A0A0B4J280 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC21.39■■□□□ 1.01
TRAV40A0A0B4J280 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC21.39■■□□□ 1.01
TRAV40A0A0B4J280 DUX4L11-201ENST00000611504 1267 ntBASIC21.39■■□□□ 1.01
TRAV40A0A0B4J280 DUX4L12-201ENST00000614593 1267 ntBASIC21.39■■□□□ 1.01
TRAV40A0A0B4J280 DUX4L14-201ENST00000621227 1267 ntBASIC21.39■■□□□ 1.01
TRAV40A0A0B4J280 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC21.39■■□□□ 1.01
TRAV40A0A0B4J280 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TRAV40A0A0B4J280 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC21.38■■□□□ 1.01
TRAV40A0A0B4J280 RPS2-202ENST00000526522 924 ntTSL 2 BASIC21.38■■□□□ 1.01
TRAV40A0A0B4J280 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
TRAV40A0A0B4J280 AC010864.1-201ENST00000609407 1511 ntBASIC21.38■■□□□ 1.01
TRAV40A0A0B4J280 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TRAV40A0A0B4J280 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC21.37■■□□□ 1.01
TRAV40A0A0B4J280 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC21.37■■□□□ 1.01
TRAV40A0A0B4J280 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC21.36■■□□□ 1.01
TRAV40A0A0B4J280 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC21.36■■□□□ 1.01
TRAV40A0A0B4J280 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TRAV40A0A0B4J280 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC21.35■■□□□ 1.01
TRAV40A0A0B4J280 GDI1-215ENST00000630693 786 ntTSL 4 BASIC21.35■■□□□ 1.01
TRAV40A0A0B4J280 AC016575.1-201ENST00000607026 382 ntBASIC21.34■■□□□ 1.01
TRAV40A0A0B4J280 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TRAV40A0A0B4J280 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TRAV40A0A0B4J280 AGPS-202ENST00000409888 815 ntTSL 4 BASIC21.33■■□□□ 1.01
TRAV40A0A0B4J280 MIR3648-2-201ENST00000581792 180 ntBASIC21.33■■□□□ 1.01
TRAV40A0A0B4J280 MIR3648-1-201ENST00000615959 180 ntBASIC21.33■■□□□ 1.01
TRAV40A0A0B4J280 CR559946.2-201ENST00000623684 991 ntBASIC21.33■■□□□ 1.01
TRAV40A0A0B4J280 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
TRAV40A0A0B4J280 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC21.33■■□□□ 1
TRAV40A0A0B4J280 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC21.32■■□□□ 1
TRAV40A0A0B4J280 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
TRAV40A0A0B4J280 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC21.32■■□□□ 1
TRAV40A0A0B4J280 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC21.32■■□□□ 1
TRAV40A0A0B4J280 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC21.31■■□□□ 1
TRAV40A0A0B4J280 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRAV40A0A0B4J280 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TRAV40A0A0B4J280 MIR639-201ENST00000384974 98 ntBASIC21.3■■□□□ 1
TRAV40A0A0B4J280 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC21.3■■□□□ 1
TRAV40A0A0B4J280 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TRAV40A0A0B4J280 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRAV40A0A0B4J280 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC21.29■■□□□ 1
TRAV40A0A0B4J280 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRAV40A0A0B4J280 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
TRAV40A0A0B4J280 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRAV40A0A0B4J280 CALM3-209ENST00000597743 577 ntTSL 4 BASIC21.28■■□□□ 1
TRAV40A0A0B4J280 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC21.28■■□□□ 1
TRAV40A0A0B4J280 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
TRAV40A0A0B4J280 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
TRAV40A0A0B4J280 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
TRAV40A0A0B4J280 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC21.27■■□□□ 1
TRAV40A0A0B4J280 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC21.27■■□□□ 1
TRAV40A0A0B4J280 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC21.27■■□□□ 1
TRAV40A0A0B4J280 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRAV40A0A0B4J280 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRAV40A0A0B4J280 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC21.26■□□□□ 0.99
TRAV40A0A0B4J280 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
TRAV40A0A0B4J280 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TRAV40A0A0B4J280 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
TRAV40A0A0B4J280 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
TRAV40A0A0B4J280 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRAV40A0A0B4J280 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRAV40A0A0B4J280 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRAV40A0A0B4J280 MIR4449-201ENST00000578365 66 ntBASIC21.25■□□□□ 0.99
TRAV40A0A0B4J280 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRAV40A0A0B4J280 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC21.24■□□□□ 0.99
TRAV40A0A0B4J280 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TRAV40A0A0B4J280 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC21.24■□□□□ 0.99
TRAV40A0A0B4J280 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
TRAV40A0A0B4J280 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRAV40A0A0B4J280 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms