Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
ABCA4P78363 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
ABCA4P78363 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
ABCA4P78363 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ABCA4P78363 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
ABCA4P78363 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
ABCA4P78363 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
ABCA4P78363 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
ABCA4P78363 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
ABCA4P78363 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC17.69■□□□□ 0.42
ABCA4P78363 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ABCA4P78363 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ABCA4P78363 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ABCA4P78363 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ABCA4P78363 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
ABCA4P78363 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
ABCA4P78363 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
ABCA4P78363 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC17.68■□□□□ 0.42
ABCA4P78363 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ABCA4P78363 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
ABCA4P78363 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
ABCA4P78363 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC17.68■□□□□ 0.42
ABCA4P78363 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
ABCA4P78363 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC17.68■□□□□ 0.42
ABCA4P78363 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC17.68■□□□□ 0.42
ABCA4P78363 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC17.68■□□□□ 0.42
ABCA4P78363 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
ABCA4P78363 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
ABCA4P78363 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC17.68■□□□□ 0.42
ABCA4P78363 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ABCA4P78363 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
ABCA4P78363 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
ABCA4P78363 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
ABCA4P78363 MFF-205ENST00000354503 1085 ntTSL 2 BASIC17.68■□□□□ 0.42
ABCA4P78363 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ABCA4P78363 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
ABCA4P78363 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
ABCA4P78363 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ABCA4P78363 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ABCA4P78363 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
ABCA4P78363 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
ABCA4P78363 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
ABCA4P78363 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC17.67■□□□□ 0.42
ABCA4P78363 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC17.67■□□□□ 0.42
ABCA4P78363 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
ABCA4P78363 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ABCA4P78363 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
ABCA4P78363 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
ABCA4P78363 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
ABCA4P78363 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ABCA4P78363 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC17.67■□□□□ 0.42
ABCA4P78363 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
ABCA4P78363 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ABCA4P78363 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ABCA4P78363 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ABCA4P78363 PALM-207ENST00000590161 2137 ntTSL 4 BASIC17.67■□□□□ 0.42
ABCA4P78363 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ABCA4P78363 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ABCA4P78363 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ABCA4P78363 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC17.67■□□□□ 0.42
ABCA4P78363 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC17.67■□□□□ 0.42
ABCA4P78363 NXN-202ENST00000537628 1340 ntTSL 3 BASIC17.67■□□□□ 0.42
ABCA4P78363 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ABCA4P78363 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ABCA4P78363 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ABCA4P78363 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
ABCA4P78363 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC17.67■□□□□ 0.42
ABCA4P78363 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC17.67■□□□□ 0.42
ABCA4P78363 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ABCA4P78363 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC17.67■□□□□ 0.42
ABCA4P78363 TK2-204ENST00000525974 1178 ntTSL 2 BASIC17.67■□□□□ 0.42
ABCA4P78363 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC17.67■□□□□ 0.42
ABCA4P78363 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC17.67■□□□□ 0.42
ABCA4P78363 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC17.67■□□□□ 0.42
ABCA4P78363 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ABCA4P78363 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC17.67■□□□□ 0.42
ABCA4P78363 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
ABCA4P78363 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
ABCA4P78363 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
ABCA4P78363 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
ABCA4P78363 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
ABCA4P78363 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
ABCA4P78363 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ABCA4P78363 AC239809.2-201ENST00000415381 517 ntBASIC17.66■□□□□ 0.42
ABCA4P78363 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17.66■□□□□ 0.42
ABCA4P78363 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
ABCA4P78363 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
ABCA4P78363 AC097493.4-201ENST00000641197 219 ntBASIC17.66■□□□□ 0.42
ABCA4P78363 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC17.66■□□□□ 0.42
ABCA4P78363 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ABCA4P78363 EXOC3-AS1-202ENST00000623673 1663 ntBASIC17.66■□□□□ 0.42
ABCA4P78363 AL135905.2-201ENST00000584934 1404 ntBASIC17.66■□□□□ 0.42
ABCA4P78363 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC17.65■□□□□ 0.42
ABCA4P78363 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC17.65■□□□□ 0.42
ABCA4P78363 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ABCA4P78363 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
ABCA4P78363 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
ABCA4P78363 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
ABCA4P78363 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC17.65■□□□□ 0.42
ABCA4P78363 AC116050.2-201ENST00000612102 1779 ntBASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms