Protein–RNA interactions for Protein: A2RU48

SMCO3, Single-pass membrane and coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO3A2RU48 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SMCO3A2RU48 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
SMCO3A2RU48 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
SMCO3A2RU48 AC009299.2-201ENST00000482477 511 ntBASIC16.68■□□□□ 0.26
SMCO3A2RU48 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SMCO3A2RU48 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC16.68■□□□□ 0.26
SMCO3A2RU48 UNC93B8-201ENST00000511903 705 ntBASIC16.68■□□□□ 0.26
SMCO3A2RU48 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
SMCO3A2RU48 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC16.68■□□□□ 0.26
SMCO3A2RU48 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SMCO3A2RU48 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
SMCO3A2RU48 AC006128.1-201ENST00000624704 1661 ntBASIC16.68■□□□□ 0.26
SMCO3A2RU48 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SMCO3A2RU48 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
SMCO3A2RU48 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SMCO3A2RU48 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SMCO3A2RU48 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
SMCO3A2RU48 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SMCO3A2RU48 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SMCO3A2RU48 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC16.67■□□□□ 0.26
SMCO3A2RU48 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC16.67■□□□□ 0.26
SMCO3A2RU48 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SMCO3A2RU48 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SMCO3A2RU48 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC16.67■□□□□ 0.26
SMCO3A2RU48 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SMCO3A2RU48 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
SMCO3A2RU48 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SMCO3A2RU48 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SMCO3A2RU48 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SMCO3A2RU48 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
SMCO3A2RU48 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
SMCO3A2RU48 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SMCO3A2RU48 KRT16P3-201ENST00000439127 1283 ntBASIC16.67■□□□□ 0.26
SMCO3A2RU48 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC16.67■□□□□ 0.26
SMCO3A2RU48 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC16.67■□□□□ 0.26
SMCO3A2RU48 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SMCO3A2RU48 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC16.67■□□□□ 0.26
SMCO3A2RU48 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
SMCO3A2RU48 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SMCO3A2RU48 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SMCO3A2RU48 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.67■□□□□ 0.26
SMCO3A2RU48 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC16.67■□□□□ 0.26
SMCO3A2RU48 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
SMCO3A2RU48 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC16.67■□□□□ 0.26
SMCO3A2RU48 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SMCO3A2RU48 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SMCO3A2RU48 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
SMCO3A2RU48 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC16.66■□□□□ 0.26
SMCO3A2RU48 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SMCO3A2RU48 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SMCO3A2RU48 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.66■□□□□ 0.26
SMCO3A2RU48 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SMCO3A2RU48 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SMCO3A2RU48 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SMCO3A2RU48 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SMCO3A2RU48 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SMCO3A2RU48 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SMCO3A2RU48 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SMCO3A2RU48 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SMCO3A2RU48 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SMCO3A2RU48 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC16.66■□□□□ 0.26
SMCO3A2RU48 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SMCO3A2RU48 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
SMCO3A2RU48 AC010525.1-201ENST00000585559 441 ntBASIC16.66■□□□□ 0.26
SMCO3A2RU48 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC16.66■□□□□ 0.26
SMCO3A2RU48 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
SMCO3A2RU48 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
SMCO3A2RU48 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
SMCO3A2RU48 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SMCO3A2RU48 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC16.66■□□□□ 0.26
SMCO3A2RU48 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SMCO3A2RU48 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
SMCO3A2RU48 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SMCO3A2RU48 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SMCO3A2RU48 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
SMCO3A2RU48 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SMCO3A2RU48 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC16.65■□□□□ 0.26
SMCO3A2RU48 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
SMCO3A2RU48 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
SMCO3A2RU48 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SMCO3A2RU48 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC16.65■□□□□ 0.26
SMCO3A2RU48 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SMCO3A2RU48 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
SMCO3A2RU48 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SMCO3A2RU48 RARRES2P1-201ENST00000474487 481 ntBASIC16.65■□□□□ 0.26
SMCO3A2RU48 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC16.65■□□□□ 0.26
SMCO3A2RU48 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SMCO3A2RU48 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SMCO3A2RU48 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC16.65■□□□□ 0.26
SMCO3A2RU48 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
SMCO3A2RU48 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
SMCO3A2RU48 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
SMCO3A2RU48 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
SMCO3A2RU48 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC16.65■□□□□ 0.26
SMCO3A2RU48 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC16.65■□□□□ 0.26
SMCO3A2RU48 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC16.65■□□□□ 0.26
SMCO3A2RU48 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SMCO3A2RU48 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.26
SMCO3A2RU48 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SMCO3A2RU48 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms