Protein–RNA interactions for Protein: S4R434

TMEM56-RWDD3, TMEM56-RWDD3 readthrough, humanhuman

Predictions only

Length 201 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM56-RWDD3S4R434 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.3
TMEM56-RWDD3S4R434 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TMEM56-RWDD3S4R434 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
TMEM56-RWDD3S4R434 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
TMEM56-RWDD3S4R434 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
TMEM56-RWDD3S4R434 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TMEM56-RWDD3S4R434 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC16.89■□□□□ 0.29
TMEM56-RWDD3S4R434 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC16.89■□□□□ 0.29
TMEM56-RWDD3S4R434 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC16.89■□□□□ 0.29
TMEM56-RWDD3S4R434 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TMEM56-RWDD3S4R434 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TMEM56-RWDD3S4R434 PXK-203ENST00000383715 1756 ntTSL 5 BASIC16.89■□□□□ 0.29
TMEM56-RWDD3S4R434 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC16.89■□□□□ 0.29
TMEM56-RWDD3S4R434 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TMEM56-RWDD3S4R434 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TMEM56-RWDD3S4R434 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC16.89■□□□□ 0.29
TMEM56-RWDD3S4R434 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
TMEM56-RWDD3S4R434 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TMEM56-RWDD3S4R434 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TMEM56-RWDD3S4R434 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TMEM56-RWDD3S4R434 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
TMEM56-RWDD3S4R434 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TMEM56-RWDD3S4R434 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC16.88■□□□□ 0.29
TMEM56-RWDD3S4R434 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
TMEM56-RWDD3S4R434 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC16.88■□□□□ 0.29
TMEM56-RWDD3S4R434 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TMEM56-RWDD3S4R434 AC133561.4-201ENST00000566112 224 ntBASIC16.88■□□□□ 0.29
TMEM56-RWDD3S4R434 SF1-220ENST00000626028 704 ntTSL 2 BASIC16.88■□□□□ 0.29
TMEM56-RWDD3S4R434 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TMEM56-RWDD3S4R434 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC16.88■□□□□ 0.29
TMEM56-RWDD3S4R434 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC16.88■□□□□ 0.29
TMEM56-RWDD3S4R434 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
TMEM56-RWDD3S4R434 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC16.88■□□□□ 0.29
TMEM56-RWDD3S4R434 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TMEM56-RWDD3S4R434 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TMEM56-RWDD3S4R434 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
TMEM56-RWDD3S4R434 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC16.88■□□□□ 0.29
TMEM56-RWDD3S4R434 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TMEM56-RWDD3S4R434 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TMEM56-RWDD3S4R434 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC16.88■□□□□ 0.29
TMEM56-RWDD3S4R434 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TMEM56-RWDD3S4R434 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC16.87■□□□□ 0.29
TMEM56-RWDD3S4R434 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TMEM56-RWDD3S4R434 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
TMEM56-RWDD3S4R434 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TMEM56-RWDD3S4R434 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TMEM56-RWDD3S4R434 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
TMEM56-RWDD3S4R434 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
TMEM56-RWDD3S4R434 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC16.87■□□□□ 0.29
TMEM56-RWDD3S4R434 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
TMEM56-RWDD3S4R434 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC16.87■□□□□ 0.29
TMEM56-RWDD3S4R434 SMG8-203ENST00000578922 2178 ntBASIC16.87■□□□□ 0.29
TMEM56-RWDD3S4R434 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TMEM56-RWDD3S4R434 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
TMEM56-RWDD3S4R434 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TMEM56-RWDD3S4R434 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TMEM56-RWDD3S4R434 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TMEM56-RWDD3S4R434 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
TMEM56-RWDD3S4R434 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
TMEM56-RWDD3S4R434 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC16.87■□□□□ 0.29
TMEM56-RWDD3S4R434 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC16.87■□□□□ 0.29
TMEM56-RWDD3S4R434 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC16.87■□□□□ 0.29
TMEM56-RWDD3S4R434 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TMEM56-RWDD3S4R434 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TMEM56-RWDD3S4R434 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
TMEM56-RWDD3S4R434 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC16.86■□□□□ 0.29
TMEM56-RWDD3S4R434 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TMEM56-RWDD3S4R434 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TMEM56-RWDD3S4R434 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC16.86■□□□□ 0.29
TMEM56-RWDD3S4R434 FXN-202ENST00000396364 980 ntTSL 5 BASIC16.86■□□□□ 0.29
TMEM56-RWDD3S4R434 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC16.86■□□□□ 0.29
TMEM56-RWDD3S4R434 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC16.86■□□□□ 0.29
TMEM56-RWDD3S4R434 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC16.86■□□□□ 0.29
TMEM56-RWDD3S4R434 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC16.86■□□□□ 0.29
TMEM56-RWDD3S4R434 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
TMEM56-RWDD3S4R434 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC16.86■□□□□ 0.29
TMEM56-RWDD3S4R434 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC16.86■□□□□ 0.29
TMEM56-RWDD3S4R434 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TMEM56-RWDD3S4R434 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC16.86■□□□□ 0.29
TMEM56-RWDD3S4R434 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
TMEM56-RWDD3S4R434 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC16.86■□□□□ 0.29
TMEM56-RWDD3S4R434 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
TMEM56-RWDD3S4R434 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TMEM56-RWDD3S4R434 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TMEM56-RWDD3S4R434 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC16.86■□□□□ 0.29
TMEM56-RWDD3S4R434 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TMEM56-RWDD3S4R434 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TMEM56-RWDD3S4R434 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC16.85■□□□□ 0.29
TMEM56-RWDD3S4R434 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
TMEM56-RWDD3S4R434 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
TMEM56-RWDD3S4R434 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TMEM56-RWDD3S4R434 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC16.85■□□□□ 0.29
TMEM56-RWDD3S4R434 RNF146-206ENST00000480444 843 ntTSL 2 BASIC16.85■□□□□ 0.29
TMEM56-RWDD3S4R434 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC16.85■□□□□ 0.29
TMEM56-RWDD3S4R434 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TMEM56-RWDD3S4R434 TCF3P1-201ENST00000423021 1937 ntBASIC16.85■□□□□ 0.29
TMEM56-RWDD3S4R434 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
TMEM56-RWDD3S4R434 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
TMEM56-RWDD3S4R434 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TMEM56-RWDD3S4R434 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 67.3 ms