Protein–RNA interactions for Protein: S4R434

TMEM56-RWDD3, TMEM56-RWDD3 readthrough, humanhuman

Predictions only

Length 201 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM56-RWDD3S4R434 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
TMEM56-RWDD3S4R434 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
TMEM56-RWDD3S4R434 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TMEM56-RWDD3S4R434 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC17.04■□□□□ 0.32
TMEM56-RWDD3S4R434 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC17.04■□□□□ 0.32
TMEM56-RWDD3S4R434 AL356740.2-201ENST00000601559 647 ntBASIC17.04■□□□□ 0.32
TMEM56-RWDD3S4R434 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TMEM56-RWDD3S4R434 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TMEM56-RWDD3S4R434 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TMEM56-RWDD3S4R434 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TMEM56-RWDD3S4R434 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC17.04■□□□□ 0.32
TMEM56-RWDD3S4R434 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TMEM56-RWDD3S4R434 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TMEM56-RWDD3S4R434 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TMEM56-RWDD3S4R434 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TMEM56-RWDD3S4R434 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
TMEM56-RWDD3S4R434 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TMEM56-RWDD3S4R434 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TMEM56-RWDD3S4R434 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
TMEM56-RWDD3S4R434 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC17.04■□□□□ 0.32
TMEM56-RWDD3S4R434 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
TMEM56-RWDD3S4R434 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
TMEM56-RWDD3S4R434 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
TMEM56-RWDD3S4R434 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TMEM56-RWDD3S4R434 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
TMEM56-RWDD3S4R434 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC17.03■□□□□ 0.32
TMEM56-RWDD3S4R434 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
TMEM56-RWDD3S4R434 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
TMEM56-RWDD3S4R434 HES6-206ENST00000409574 738 ntTSL 2 BASIC17.03■□□□□ 0.32
TMEM56-RWDD3S4R434 SRD5A1P1-201ENST00000442297 786 ntBASIC17.03■□□□□ 0.32
TMEM56-RWDD3S4R434 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TMEM56-RWDD3S4R434 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC17.03■□□□□ 0.32
TMEM56-RWDD3S4R434 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC17.03■□□□□ 0.32
TMEM56-RWDD3S4R434 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TMEM56-RWDD3S4R434 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TMEM56-RWDD3S4R434 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TMEM56-RWDD3S4R434 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
TMEM56-RWDD3S4R434 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
TMEM56-RWDD3S4R434 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC17.03■□□□□ 0.32
TMEM56-RWDD3S4R434 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TMEM56-RWDD3S4R434 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TMEM56-RWDD3S4R434 USP39-204ENST00000409766 2033 ntTSL 2 BASIC17.03■□□□□ 0.32
TMEM56-RWDD3S4R434 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
TMEM56-RWDD3S4R434 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TMEM56-RWDD3S4R434 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC17.02■□□□□ 0.32
TMEM56-RWDD3S4R434 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TMEM56-RWDD3S4R434 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
TMEM56-RWDD3S4R434 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TMEM56-RWDD3S4R434 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
TMEM56-RWDD3S4R434 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TMEM56-RWDD3S4R434 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TMEM56-RWDD3S4R434 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TMEM56-RWDD3S4R434 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC17.02■□□□□ 0.32
TMEM56-RWDD3S4R434 AL138724.1-201ENST00000606771 1088 ntBASIC17.02■□□□□ 0.32
TMEM56-RWDD3S4R434 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC17.02■□□□□ 0.32
TMEM56-RWDD3S4R434 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
TMEM56-RWDD3S4R434 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC17.02■□□□□ 0.32
TMEM56-RWDD3S4R434 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
TMEM56-RWDD3S4R434 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
TMEM56-RWDD3S4R434 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
TMEM56-RWDD3S4R434 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
TMEM56-RWDD3S4R434 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
TMEM56-RWDD3S4R434 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
TMEM56-RWDD3S4R434 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC17.02■□□□□ 0.31
TMEM56-RWDD3S4R434 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TMEM56-RWDD3S4R434 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TMEM56-RWDD3S4R434 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
TMEM56-RWDD3S4R434 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC17.01■□□□□ 0.31
TMEM56-RWDD3S4R434 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
TMEM56-RWDD3S4R434 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TMEM56-RWDD3S4R434 KRT16P3-201ENST00000439127 1283 ntBASIC17.01■□□□□ 0.31
TMEM56-RWDD3S4R434 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC17.01■□□□□ 0.31
TMEM56-RWDD3S4R434 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC17.01■□□□□ 0.31
TMEM56-RWDD3S4R434 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TMEM56-RWDD3S4R434 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC17.01■□□□□ 0.31
TMEM56-RWDD3S4R434 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TMEM56-RWDD3S4R434 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
TMEM56-RWDD3S4R434 PCDHAC2-203ENST00000615316 3011 ntBASIC17.01■□□□□ 0.31
TMEM56-RWDD3S4R434 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC17.01■□□□□ 0.31
TMEM56-RWDD3S4R434 AL512408.1-201ENST00000569378 2000 ntBASIC17.01■□□□□ 0.31
TMEM56-RWDD3S4R434 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC17.01■□□□□ 0.31
TMEM56-RWDD3S4R434 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TMEM56-RWDD3S4R434 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC17.01■□□□□ 0.31
TMEM56-RWDD3S4R434 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
TMEM56-RWDD3S4R434 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
TMEM56-RWDD3S4R434 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC17■□□□□ 0.31
TMEM56-RWDD3S4R434 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
TMEM56-RWDD3S4R434 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC17■□□□□ 0.31
TMEM56-RWDD3S4R434 BID-204ENST00000399767 2129 ntTSL 2 BASIC17■□□□□ 0.31
TMEM56-RWDD3S4R434 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TMEM56-RWDD3S4R434 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC17■□□□□ 0.31
TMEM56-RWDD3S4R434 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
TMEM56-RWDD3S4R434 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC17■□□□□ 0.31
TMEM56-RWDD3S4R434 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC17■□□□□ 0.31
TMEM56-RWDD3S4R434 MIR3621-201ENST00000580529 85 ntBASIC17■□□□□ 0.31
TMEM56-RWDD3S4R434 RASSF1-AS1-201ENST00000629828 790 ntBASIC17■□□□□ 0.31
TMEM56-RWDD3S4R434 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TMEM56-RWDD3S4R434 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC17■□□□□ 0.31
TMEM56-RWDD3S4R434 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
TMEM56-RWDD3S4R434 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 249.3 ms