Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC33.27■■■□□ 2.92
ZC3H4Q9UPT8 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC33.27■■■□□ 2.92
ZC3H4Q9UPT8 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC33.27■■■□□ 2.92
ZC3H4Q9UPT8 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC33.22■■■□□ 2.91
ZC3H4Q9UPT8 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC33.22■■■□□ 2.91
ZC3H4Q9UPT8 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC33.21■■■□□ 2.91
ZC3H4Q9UPT8 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC33.21■■■□□ 2.91
ZC3H4Q9UPT8 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC33.2■■■□□ 2.91
ZC3H4Q9UPT8 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC33.2■■■□□ 2.91
ZC3H4Q9UPT8 MIR6090-201ENST00000622481 60 ntBASIC33.2■■■□□ 2.91
ZC3H4Q9UPT8 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC33.19■■■□□ 2.9
ZC3H4Q9UPT8 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
ZC3H4Q9UPT8 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
ZC3H4Q9UPT8 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC33.17■■■□□ 2.9
ZC3H4Q9UPT8 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
ZC3H4Q9UPT8 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC33.16■■■□□ 2.9
ZC3H4Q9UPT8 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC33.15■■■□□ 2.9
ZC3H4Q9UPT8 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC33.15■■■□□ 2.9
ZC3H4Q9UPT8 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC33.14■■■□□ 2.9
ZC3H4Q9UPT8 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC33.14■■■□□ 2.9
ZC3H4Q9UPT8 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC33.11■■■□□ 2.89
ZC3H4Q9UPT8 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC33.11■■■□□ 2.89
ZC3H4Q9UPT8 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC33.1■■■□□ 2.89
ZC3H4Q9UPT8 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC33.09■■■□□ 2.89
ZC3H4Q9UPT8 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC33.09■■■□□ 2.89
ZC3H4Q9UPT8 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC33.08■■■□□ 2.89
ZC3H4Q9UPT8 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC33.07■■■□□ 2.89
ZC3H4Q9UPT8 RARRES2P2-201ENST00000394842 485 ntBASIC33.07■■■□□ 2.88
ZC3H4Q9UPT8 ABHD17AP5-201ENST00000580133 923 ntBASIC33.07■■■□□ 2.88
ZC3H4Q9UPT8 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC33.07■■■□□ 2.88
ZC3H4Q9UPT8 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC33.07■■■□□ 2.88
ZC3H4Q9UPT8 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
ZC3H4Q9UPT8 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
ZC3H4Q9UPT8 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC33.03■■■□□ 2.88
ZC3H4Q9UPT8 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC33.02■■■□□ 2.88
ZC3H4Q9UPT8 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC33.02■■■□□ 2.88
ZC3H4Q9UPT8 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC33.02■■■□□ 2.88
ZC3H4Q9UPT8 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC33.02■■■□□ 2.88
ZC3H4Q9UPT8 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
ZC3H4Q9UPT8 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC33■■■□□ 2.87
ZC3H4Q9UPT8 METRNL-202ENST00000570778 967 ntTSL 5 BASIC33■■■□□ 2.87
ZC3H4Q9UPT8 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC32.99■■■□□ 2.87
ZC3H4Q9UPT8 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC32.98■■■□□ 2.87
ZC3H4Q9UPT8 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC32.98■■■□□ 2.87
ZC3H4Q9UPT8 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC32.97■■■□□ 2.87
ZC3H4Q9UPT8 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC32.96■■■□□ 2.87
ZC3H4Q9UPT8 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC32.96■■■□□ 2.87
ZC3H4Q9UPT8 DUX4L13-201ENST00000554103 1267 ntBASIC32.96■■■□□ 2.87
ZC3H4Q9UPT8 DUX4L15-201ENST00000611059 1267 ntBASIC32.96■■■□□ 2.87
ZC3H4Q9UPT8 DUX4L23-201ENST00000615195 1269 ntBASIC32.96■■■□□ 2.87
ZC3H4Q9UPT8 DUX4L24-201ENST00000617576 1269 ntBASIC32.96■■■□□ 2.87
ZC3H4Q9UPT8 DUX4L22-201ENST00000618238 1269 ntBASIC32.96■■■□□ 2.87
ZC3H4Q9UPT8 DUX4L20-201ENST00000619712 1269 ntBASIC32.96■■■□□ 2.87
ZC3H4Q9UPT8 DUX4L21-201ENST00000622058 1269 ntBASIC32.96■■■□□ 2.87
ZC3H4Q9UPT8 DUX4L10-201ENST00000622460 1267 ntBASIC32.96■■■□□ 2.87
ZC3H4Q9UPT8 DUX4L25-201ENST00000624915 1269 ntBASIC32.96■■■□□ 2.87
ZC3H4Q9UPT8 SRP68-213ENST00000629930 165 ntTSL 5 BASIC32.95■■■□□ 2.86
ZC3H4Q9UPT8 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC32.94■■■□□ 2.86
ZC3H4Q9UPT8 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC32.94■■■□□ 2.86
ZC3H4Q9UPT8 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
ZC3H4Q9UPT8 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC32.91■■■□□ 2.86
ZC3H4Q9UPT8 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC32.91■■■□□ 2.86
ZC3H4Q9UPT8 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC32.91■■■□□ 2.86
ZC3H4Q9UPT8 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
ZC3H4Q9UPT8 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC32.87■■■□□ 2.85
ZC3H4Q9UPT8 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC32.87■■■□□ 2.85
ZC3H4Q9UPT8 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
ZC3H4Q9UPT8 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC32.86■■■□□ 2.85
ZC3H4Q9UPT8 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC32.85■■■□□ 2.85
ZC3H4Q9UPT8 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC32.85■■■□□ 2.85
ZC3H4Q9UPT8 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC32.85■■■□□ 2.85
ZC3H4Q9UPT8 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC32.85■■■□□ 2.85
ZC3H4Q9UPT8 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC32.85■■■□□ 2.85
ZC3H4Q9UPT8 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC32.85■■■□□ 2.85
ZC3H4Q9UPT8 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC32.85■■■□□ 2.85
ZC3H4Q9UPT8 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC32.85■■■□□ 2.85
ZC3H4Q9UPT8 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC32.85■■■□□ 2.85
ZC3H4Q9UPT8 HES6-205ENST00000409356 528 ntTSL 2 BASIC32.83■■■□□ 2.85
ZC3H4Q9UPT8 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC32.83■■■□□ 2.85
ZC3H4Q9UPT8 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC32.82■■■□□ 2.85
ZC3H4Q9UPT8 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
ZC3H4Q9UPT8 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
ZC3H4Q9UPT8 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC32.81■■■□□ 2.84
ZC3H4Q9UPT8 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
ZC3H4Q9UPT8 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
ZC3H4Q9UPT8 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
ZC3H4Q9UPT8 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
ZC3H4Q9UPT8 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC32.79■■■□□ 2.84
ZC3H4Q9UPT8 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC32.78■■■□□ 2.84
ZC3H4Q9UPT8 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
ZC3H4Q9UPT8 RNF126P1-201ENST00000567452 1320 ntBASIC32.78■■■□□ 2.84
ZC3H4Q9UPT8 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC32.77■■■□□ 2.84
ZC3H4Q9UPT8 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC32.77■■■□□ 2.84
ZC3H4Q9UPT8 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC32.77■■■□□ 2.84
ZC3H4Q9UPT8 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC32.76■■■□□ 2.83
ZC3H4Q9UPT8 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC32.76■■■□□ 2.83
ZC3H4Q9UPT8 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
ZC3H4Q9UPT8 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC32.73■■■□□ 2.83
ZC3H4Q9UPT8 GPX1-201ENST00000419349 1106 ntBASIC32.73■■■□□ 2.83
ZC3H4Q9UPT8 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC32.73■■■□□ 2.83
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms