Protein–RNA interactions for Protein: O00571

DDX3X, ATP-dependent RNA helicase DDX3X, humanhuman

Known RBP eCLIP

Length 662 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX3XO00571 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC19.74■□□□□ 0.757e-32■□□□□ 8.2
DDX3XO00571 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.457e-32■□□□□ 8.2
DDX3XO00571 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC15.01□□□□□ -0.017e-32■□□□□ 8.2
DDX3XO00571 ACTN4-211ENST00000589528 441 ntTSL 214.95□□□□□ -0.027e-32■□□□□ 8.2
DDX3XO00571 NUP54-214ENST00000514307 566 ntTSL 417.12■□□□□ 0.336e-11■□□□□ 8.2
DDX3XO00571 ANXA11-204ENST00000437799 610 ntTSL 215.6■□□□□ 0.096e-11■□□□□ 8.2
DDX3XO00571 ANXA11-201ENST00000265447 2526 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.046e-11■□□□□ 8.2
DDX3XO00571 POLD1-205ENST00000595904 3402 ntTSL 1 (best) BASIC14.56□□□□□ -0.086e-11■□□□□ 8.2
DDX3XO00571 NUP54-209ENST00000510569 494 ntTSL 58.17□□□□□ -1.16e-11■□□□□ 8.2
DDX3XO00571 NUP54-210ENST00000510884 441 ntTSL 38.17□□□□□ -1.16e-11■□□□□ 8.2
DDX3XO00571 NUP54-204ENST00000506098 548 ntTSL 47.64□□□□□ -1.196e-11■□□□□ 8.2
DDX3XO00571 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.571e-6■□□□□ 8.1
DDX3XO00571 CDK8-205ENST00000536792 3032 ntTSL 1 (best)17.4■□□□□ 0.381e-6■□□□□ 8.1
DDX3XO00571 FLOT2-209ENST00000584569 266 ntTSL 314.97□□□□□ -0.011e-6■□□□□ 8.1
DDX3XO00571 DPH3-203ENST00000462982 738 ntTSL 211.08□□□□□ -0.641e-6■□□□□ 8.1
DDX3XO00571 GSK3A-202ENST00000398249 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC9.94□□□□□ -0.821e-6■□□□□ 8.1
DDX3XO00571 DPH3-201ENST00000285082 1178 ntTSL 1 (best)8.42□□□□□ -1.061e-6■□□□□ 8.1
DDX3XO00571 NAPRT-201ENST00000340490 1774 ntTSL 1 (best)26.69■■□□□ 1.868e-10■□□□□ 8.1
DDX3XO00571 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.468e-10■□□□□ 8.1
DDX3XO00571 NAPRT-212ENST00000525583 1066 ntTSL 522.77■■□□□ 1.248e-10■□□□□ 8.1
DDX3XO00571 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC20.74■□□□□ 0.918e-10■□□□□ 8.1
DDX3XO00571 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC20.07■□□□□ 0.88e-10■□□□□ 8.1
DDX3XO00571 NAPRT-208ENST00000480946 1199 ntTSL 519.46■□□□□ 0.718e-10■□□□□ 8.1
DDX3XO00571 NAPRT-210ENST00000491904 641 ntTSL 318.91■□□□□ 0.628e-10■□□□□ 8.1
DDX3XO00571 NAPRT-214ENST00000532645 866 ntTSL 518.13■□□□□ 0.498e-10■□□□□ 8.1
DDX3XO00571 NAPRT-206ENST00000462059 722 ntTSL 217.46■□□□□ 0.398e-10■□□□□ 8.1
DDX3XO00571 DDX56-212ENST00000485367 1781 ntTSL 511□□□□□ -0.658e-10■□□□□ 8.1
DDX3XO00571 SLC6A14-202ENST00000598581 4520 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.171e-17■□□□□ 8.1
DDX3XO00571 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC21.77■■□□□ 1.081e-41■□□□□ 8.1
DDX3XO00571 HNF4A-203ENST00000372920 3340 ntTSL 1 (best)19.69■□□□□ 0.741e-41■□□□□ 8.1
DDX3XO00571 HNF4A-204ENST00000415691 2302 ntTSL 1 (best) BASIC13.91□□□□□ -0.181e-41■□□□□ 8.1
DDX3XO00571 HNF4A-201ENST00000316099 6445 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.631e-41■□□□□ 8.1
DDX3XO00571 RAB27A-202ENST00000396307 3459 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.983e-13■□□□□ 8.1
DDX3XO00571 RAB27A-205ENST00000564609 1057 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.213e-13■□□□□ 8.1
DDX3XO00571 RAB27A-212ENST00000569493 1013 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.333e-13■□□□□ 8.1
DDX3XO00571 RAB27A-207ENST00000565972 809 ntTSL 36.2□□□□□ -1.423e-13■□□□□ 8.1
DDX3XO00571 RAB27A-211ENST00000568803 432 ntTSL 35.71□□□□□ -1.53e-13■□□□□ 8.1
DDX3XO00571 RAB27A-209ENST00000567380 701 ntTSL 34.41□□□□□ -1.73e-13■□□□□ 8.1
DDX3XO00571 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.811e-8■□□□□ 8.1
DDX3XO00571 MTERF2-204ENST00000548101 715 ntTSL 318.24■□□□□ 0.511e-8■□□□□ 8.1
DDX3XO00571 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.431e-8■□□□□ 8.1
DDX3XO00571 MTERF2-205ENST00000550496 418 ntTSL 316.97■□□□□ 0.311e-8■□□□□ 8.1
DDX3XO00571 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31e-8■□□□□ 8.1
DDX3XO00571 ADD2-211ENST00000473232 582 ntTSL 416.22■□□□□ 0.191e-8■□□□□ 8.1
DDX3XO00571 ADD2-209ENST00000447731 582 ntTSL 415.95■□□□□ 0.141e-8■□□□□ 8.1
DDX3XO00571 ADD2-213ENST00000496178 551 ntTSL 415.32■□□□□ 0.041e-8■□□□□ 8.1
DDX3XO00571 ADD2-202ENST00000355733 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.141e-8■□□□□ 8.1
DDX3XO00571 MTERF2-207ENST00000552029 3235 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.151e-8■□□□□ 8.1
DDX3XO00571 MTERF2-203ENST00000547115 749 ntTSL 312.48□□□□□ -0.411e-8■□□□□ 8.1
DDX3XO00571 ADD2-205ENST00000413157 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.561e-8■□□□□ 8.1
DDX3XO00571 KLHL15-201ENST00000328046 6272 ntAPPRIS P1 TSL 2 BASIC10.39□□□□□ -0.751e-8■□□□□ 8.1
DDX3XO00571 ADD2-201ENST00000264436 9267 ntAPPRIS P4 TSL 1 (best) BASIC10.2□□□□□ -0.781e-8■□□□□ 8.1
DDX3XO00571 ADD2-203ENST00000403045 3745 ntTSL 210.16□□□□□ -0.781e-8■□□□□ 8.1
DDX3XO00571 EIF2A-211ENST00000477551 1906 ntTSL 1 (best)3.31□□□□□ -1.881e-8■□□□□ 8.1
DDX3XO00571 LAMB1-204ENST00000393561 5766 ntTSL 5 BASIC11.98□□□□□ -0.491e-20■□□□□ 8.1
DDX3XO00571 TIMM9-205ENST00000555404 430 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.139e-8■□□□□ 8.1
DDX3XO00571 TIMM9-210ENST00000557397 571 ntTSL 46.75□□□□□ -1.339e-8■□□□□ 8.1
DDX3XO00571 TIMM9-201ENST00000216463 1075 ntTSL 36.19□□□□□ -1.429e-8■□□□□ 8.1
DDX3XO00571 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.469e-8■□□□□ 8.1
DDX3XO00571 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.489e-8■□□□□ 8.1
DDX3XO00571 TIMM9-204ENST00000555097 377 ntTSL 55.26□□□□□ -1.579e-8■□□□□ 8.1
DDX3XO00571 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC5.06□□□□□ -1.69e-8■□□□□ 8.1
DDX3XO00571 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC4.61□□□□□ -1.679e-8■□□□□ 8.1
DDX3XO00571 PPP6R3-214ENST00000527403 4862 ntTSL 5 BASIC10.14□□□□□ -0.794e-15■□□□□ 8.1
DDX3XO00571 PPP6R3-207ENST00000525050 513 ntTSL 35.57□□□□□ -1.524e-15■□□□□ 8.1
DDX3XO00571 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC21.26■□□□□ 0.997e-21■□□□□ 8.1
DDX3XO00571 HIST1H2BN-201ENST00000396980 432 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.377e-21■□□□□ 8.1
DDX3XO00571 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.9□□□□□ -1.791e-7■□□□□ 8.1
DDX3XO00571 HBE1-201ENST00000292896 827 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.721e-323■□□□□ 8.1
DDX3XO00571 HMBOX1-215ENST00000560599 1426 ntTSL 520.72■□□□□ 0.912e-7■□□□□ 8.1
DDX3XO00571 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC17.33■□□□□ 0.362e-7■□□□□ 8.1
DDX3XO00571 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC16.1■□□□□ 0.172e-7■□□□□ 8.1
DDX3XO00571 HMBOX1-203ENST00000397358 4082 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.132e-7■□□□□ 8.1
DDX3XO00571 CIZ1-223ENST00000491954 955 ntTSL 313.12□□□□□ -0.312e-7■□□□□ 8.1
DDX3XO00571 SNRNP25-206ENST00000481947 1260 ntTSL 512.69□□□□□ -0.382e-7■□□□□ 8.1
DDX3XO00571 ELP3-218ENST00000524103 1914 ntTSL 2 BASIC11.67□□□□□ -0.542e-7■□□□□ 8.1
DDX3XO00571 HMBOX1-207ENST00000519662 811 ntTSL 411.29□□□□□ -0.62e-7■□□□□ 8.1
DDX3XO00571 ELP3-209ENST00000520288 566 ntTSL 411.08□□□□□ -0.642e-7■□□□□ 8.1
DDX3XO00571 ELP3-201ENST00000256398 3452 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.692e-7■□□□□ 8.1
DDX3XO00571 ELP3-217ENST00000523760 879 ntTSL 510.6□□□□□ -0.712e-7■□□□□ 8.1
DDX3XO00571 HMBOX1-201ENST00000287701 3184 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.722e-7■□□□□ 8.1
DDX3XO00571 ELP3-210ENST00000521015 3158 ntTSL 1 (best) BASIC10.02□□□□□ -0.812e-7■□□□□ 8.1
DDX3XO00571 ELP3-204ENST00000518112 2059 ntTSL 29.83□□□□□ -0.842e-7■□□□□ 8.1
DDX3XO00571 ELP3-219ENST00000537665 3053 ntTSL 2 BASIC9.4□□□□□ -0.92e-7■□□□□ 8.1
DDX3XO00571 ELP3-202ENST00000380353 3078 ntTSL 2 BASIC9.26□□□□□ -0.932e-7■□□□□ 8.1
DDX3XO00571 ELP3-213ENST00000521938 1004 ntTSL 28.96□□□□□ -0.982e-7■□□□□ 8.1
DDX3XO00571 GFM1-203ENST00000464732 502 ntTSL 38.88□□□□□ -0.995e-14■□□□□ 8.1
DDX3XO00571 ELP3-216ENST00000523687 1923 ntTSL 28.79□□□□□ -12e-7■□□□□ 8.1
DDX3XO00571 PLAGL1-202ENST00000360537 4430 ntAPPRIS P1 TSL 5 BASIC8.74□□□□□ -1.012e-7■□□□□ 8.1
DDX3XO00571 SNRNP25-205ENST00000466183 1130 ntTSL 28.72□□□□□ -1.012e-7■□□□□ 8.1
DDX3XO00571 ELP3-205ENST00000519261 1924 ntTSL 28.7□□□□□ -1.022e-7■□□□□ 8.1
DDX3XO00571 ELP3-212ENST00000521570 656 ntTSL 57.85□□□□□ -1.152e-7■□□□□ 8.1
DDX3XO00571 HMBOX1-214ENST00000560357 979 ntTSL 27.74□□□□□ -1.172e-7■□□□□ 8.1
DDX3XO00571 PLAGL1-212ENST00000626022 559 ntTSL 47.53□□□□□ -1.22e-7■□□□□ 8.1
DDX3XO00571 MED8-205ENST00000473560 979 ntTSL 37.28□□□□□ -1.242e-7■□□□□ 8.1
DDX3XO00571 ST13-202ENST00000411695 549 ntTSL 57.18□□□□□ -1.262e-7■□□□□ 8.1
DDX3XO00571 HMBOX1-208ENST00000521516 2216 ntTSL 27.17□□□□□ -1.262e-7■□□□□ 8.1
DDX3XO00571 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC6.69□□□□□ -1.342e-7■□□□□ 8.1
DDX3XO00571 ELP3-208ENST00000520270 545 ntTSL 46.34□□□□□ -1.392e-7■□□□□ 8.1
DDX3XO00571 SCFD1-219ENST00000556413 512 ntTSL 36.27□□□□□ -1.412e-7■□□□□ 8.1
Retrieved 100 of 47,714 protein–RNA pairs in 3656.5 ms