RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 NISCHQ9Y2I1 1504 aa36.22■■■■□ 3.39
NUP54-214ENST00000514307 CCDC180Q9P1Z9 1646 aa31.56■■■□□ 2.64
NUP54-214ENST00000514307 ABCC9O60706 1549 aa30.47■■■□□ 2.47
NUP54-214ENST00000514307 ZCCHC6Q5VYS8 1495 aaKnown RBP30.31■■■□□ 2.44
NUP54-214ENST00000514307 DCAF8L2P0C7V8 631 aa30.21■■■□□ 2.43
NUP54-214ENST00000514307 DCAF1Q9Y4B6 1507 aa30■■■□□ 2.39
NUP54-214ENST00000514307 MYO15BQ96JP2 1530 aa29.76■■■□□ 2.35
NUP54-214ENST00000514307 NACADO15069 1562 aa29.59■■■□□ 2.33
NUP54-214ENST00000514307 SHROOM4Q9ULL8 1493 aa29.39■■■□□ 2.3
NUP54-214ENST00000514307 RB1CC1Q8TDY2 1594 aa29.35■■■□□ 2.29
NUP54-214ENST00000514307 SCRIBQ14160 1630 aa28.94■■■□□ 2.22
NUP54-214ENST00000514307 UNC13AQ9UPW8 1703 aa28.72■■■□□ 2.19
NUP54-214ENST00000514307 PABPN1Q86U42 306 aaKnown RBP eCLIP28.45■■■□□ 2.14
NUP54-214ENST00000514307 SUPT5HO00267 1087 aaKnown RBP28.36■■■□□ 2.13
NUP54-214ENST00000514307 BICRAQ9NZM4 1560 aa28.33■■■□□ 2.12
NUP54-214ENST00000514307 CECR2Q9BXF3 1484 aa28.09■■■□□ 2.09
NUP54-214ENST00000514307 RSF1Q96T23 1441 aaPredicted RBP28.06■■■□□ 2.08
NUP54-214ENST00000514307 DNAJC5BQ9UF47 199 aa28.03■■■□□ 2.08
NUP54-214ENST00000514307 BAZ1AQ9NRL2 1556 aaPredicted RBP27.99■■■□□ 2.07
NUP54-214ENST00000514307 MROH2BQ7Z745 1585 aa27.9■■■□□ 2.06
NUP54-214ENST00000514307 SMARCA4P51532 1647 aa27.78■■■□□ 2.04
NUP54-214ENST00000514307 EIF4G1Q04637 1599 aaKnown RBP27.58■■■□□ 2.01
NUP54-214ENST00000514307 WIZO95785 1651 aa27.57■■■□□ 2
NUP54-214ENST00000514307 CC2D2AQ9P2K1 1620 aa27.55■■■□□ 2
NUP54-214ENST00000514307 SMARCA2P51531 1590 aa27.49■■□□□ 1.99
NUP54-214ENST00000514307 PEG3Q9GZU2 1588 aa27.49■■□□□ 1.99
NUP54-214ENST00000514307 ATAD2BQ9ULI0 1458 aa27.49■■□□□ 1.99
NUP54-214ENST00000514307 TOP2AP11388 1531 aaKnown RBP27.4■■□□□ 1.98
NUP54-214ENST00000514307 NCAPD3P42695 1498 aa27.37■■□□□ 1.97
NUP54-214ENST00000514307 BAZ1BQ9UIG0 1483 aaKnown RBP27.33■■□□□ 1.97
NUP54-214ENST00000514307 CCDC88BA6NC98 1476 aa27.19■■□□□ 1.94
NUP54-214ENST00000514307 HMGXB3Q12766 1538 aa27.18■■□□□ 1.94
NUP54-214ENST00000514307 CHIC1Q5VXU3 224 aa27.06■■□□□ 1.92
NUP54-214ENST00000514307 TRIM41Q8WV44 630 aa26.79■■□□□ 1.88
NUP54-214ENST00000514307 CADPSQ9ULU8 1353 aa26.69■■□□□ 1.86
NUP54-214ENST00000514307 CFTRP13569 1480 aa26.65■■□□□ 1.86
NUP54-214ENST00000514307 WRNQ14191 1432 aaPredicted RBP eCLIP26.45■■□□□ 1.82
NUP54-214ENST00000514307 ABCC8Q09428 1581 aa26.37■■□□□ 1.81
NUP54-214ENST00000514307 LAMC3Q9Y6N6 1575 aa26.37■■□□□ 1.81
NUP54-214ENST00000514307 PDS5BQ9NTI5 1447 aa26.34■■□□□ 1.81
NUP54-214ENST00000514307 NESP48681 1621 aa26.34■■□□□ 1.81
NUP54-214ENST00000514307 FANCD2Q9BXW9 1451 aa26.29■■□□□ 1.8
NUP54-214ENST00000514307 ERCC6Q03468 1493 aa26.23■■□□□ 1.79
NUP54-214ENST00000514307 PRDM2Q13029 1718 aa26.2■■□□□ 1.79
NUP54-214ENST00000514307 FAM9AQ8IZU1 332 aaPredicted RBP26.16■■□□□ 1.78
NUP54-214ENST00000514307 CEP164Q9UPV0 1460 aa26.14■■□□□ 1.78
NUP54-214ENST00000514307 TOP2BQ02880 1626 aa26.14■■□□□ 1.77
NUP54-214ENST00000514307 SYNJ1O43426 1573 aa26.13■■□□□ 1.77
NUP54-214ENST00000514307 KIF21AQ7Z4S6 1674 aa26.12■■□□□ 1.77
NUP54-214ENST00000514307 CUX1P39880 1505 aa26.09■■□□□ 1.77
NUP54-214ENST00000514307 EEA1Q15075 1411 aa26.09■■□□□ 1.77
NUP54-214ENST00000514307 BIVM-ERCC5R4GMW8 1640 aa26.04■■□□□ 1.76
NUP54-214ENST00000514307 CSRNP3Q8WYN3 585 aa26.03■■□□□ 1.76
NUP54-214ENST00000514307 THOC2Q8NI27 1593 aaKnown RBP26■■□□□ 1.75
NUP54-214ENST00000514307 SOGA1O94964 1423 aa25.99■■□□□ 1.75
NUP54-214ENST00000514307 LOC105371045A0A1W2PR82 267 aa25.98■■□□□ 1.75
NUP54-214ENST00000514307 DNMBPQ6XZF7 1577 aa25.95■■□□□ 1.75
NUP54-214ENST00000514307 TOPBP1Q92547 1522 aa25.94■■□□□ 1.74
NUP54-214ENST00000514307 CUX2O14529 1486 aa25.91■■□□□ 1.74
NUP54-214ENST00000514307 URB2Q14146 1524 aaKnown RBP25.88■■□□□ 1.73
NUP54-214ENST00000514307 FGD5Q6ZNL6 1462 aa25.88■■□□□ 1.73
NUP54-214ENST00000514307 MRC2Q9UBG0 1479 aa25.87■■□□□ 1.73
NUP54-214ENST00000514307 KIF27Q86VH2 1401 aa25.87■■□□□ 1.73
NUP54-214ENST00000514307 RUSC2Q8N2Y8 1516 aa25.83■■□□□ 1.73
NUP54-214ENST00000514307 POLA1P09884 1462 aaPredicted RBP25.79■■□□□ 1.72
NUP54-214ENST00000514307 EHMT2Q96KQ7 1210 aa25.71■■□□□ 1.71
NUP54-214ENST00000514307 ABCA10Q8WWZ4 1543 aa25.7■■□□□ 1.7
NUP54-214ENST00000514307 RAD54L2Q9Y4B4 1467 aa25.7■■□□□ 1.7
NUP54-214ENST00000514307 UBTFP17480 764 aaKnown RBP25.69■■□□□ 1.7
NUP54-214ENST00000514307 WDR62O43379 1518 aa25.66■■□□□ 1.7
NUP54-214ENST00000514307 IGF1RP08069 1367 aa25.66■■□□□ 1.7
NUP54-214ENST00000514307 GOLGA3Q08378 1498 aa25.6■■□□□ 1.69
NUP54-214ENST00000514307 IFT140Q96RY7 1462 aa25.59■■□□□ 1.69
NUP54-214ENST00000514307 TNIKQ9UKE5 1360 aa25.58■■□□□ 1.69
NUP54-214ENST00000514307 TDRD9Q8NDG6 1382 aaKnown RBP25.57■■□□□ 1.68
NUP54-214ENST00000514307 PRXQ9BXM0 1461 aa25.55■■□□□ 1.68
NUP54-214ENST00000514307 CARMIL1Q5VZK9 1371 aa25.54■■□□□ 1.68
NUP54-214ENST00000514307 KIF21BO75037 1637 aa25.53■■□□□ 1.68
NUP54-214ENST00000514307 GAPVD1Q14C86 1478 aa25.5■■□□□ 1.67
NUP54-214ENST00000514307 TARBP1Q13395 1621 aaKnown RBP25.48■■□□□ 1.67
NUP54-214ENST00000514307 ERICH3Q5RHP9 1530 aa25.46■■□□□ 1.67
NUP54-214ENST00000514307 RAPGEF2Q9Y4G8 1499 aa25.44■■□□□ 1.66
NUP54-214ENST00000514307 AQRO60306 1485 aaKnown RBP eCLIP25.4■■□□□ 1.66
NUP54-214ENST00000514307 WDR97A6NE52 1622 aa25.37■■□□□ 1.65
NUP54-214ENST00000514307 GRIN2BQ13224 1484 aa25.36■■□□□ 1.65
NUP54-214ENST00000514307 ABCA5Q8WWZ7 1642 aa25.35■■□□□ 1.65
NUP54-214ENST00000514307 CEP162Q5TB80 1403 aa25.3■■□□□ 1.64
NUP54-214ENST00000514307 ZNF608Q9ULD9 1512 aaPredicted RBP25.3■■□□□ 1.64
NUP54-214ENST00000514307 CUL7Q14999 1698 aa25.29■■□□□ 1.64
NUP54-214ENST00000514307 FHAD1B1AJZ9 1412 aa25.28■■□□□ 1.64
NUP54-214ENST00000514307 DNAJC5Q9H3Z4 198 aa25.25■■□□□ 1.63
NUP54-214ENST00000514307 CLIP1P30622 1438 aa25.21■■□□□ 1.63
NUP54-214ENST00000514307 RANGAP1P46060 587 aaPredicted RBP25.19■■□□□ 1.62
NUP54-214ENST00000514307 CHMP7Q8WUX9 453 aaPredicted RBP25.18■■□□□ 1.62
NUP54-214ENST00000514307 MAGI1Q96QZ7 1491 aaPredicted RBP25.14■■□□□ 1.61
NUP54-214ENST00000514307 EIF4G3O43432 1585 aaKnown RBP25.12■■□□□ 1.61
NUP54-214ENST00000514307 PBRM1Q86U86 1689 aa25.1■■□□□ 1.61
NUP54-214ENST00000514307 SNAPC4Q5SXM2 1469 aa25.09■■□□□ 1.61
NUP54-214ENST00000514307 FBLN2P98095 1184 aa25.08■■□□□ 1.61
NUP54-214ENST00000514307 ADAMTS12P58397 1594 aa25.05■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms