RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 AEBP2Q6ZN18 517 aaPredicted RBP34.46■■■■□ 3.11
NUP54-209ENST00000510569 CHIC1Q5VXU3 224 aa33.15■■■□□ 2.9
NUP54-209ENST00000510569 SENP3Q9H4L4 574 aaPredicted RBP29.35■■■□□ 2.29
NUP54-209ENST00000510569 PHF23Q9BUL5 403 aaPredicted RBP29.08■■■□□ 2.25
NUP54-209ENST00000510569 FOXD1Q16676 465 aa27.28■■□□□ 1.96
NUP54-209ENST00000510569 PLPPR3Q6T4P5 718 aa26.67■■□□□ 1.86
NUP54-209ENST00000510569 PPP6R1Q9UPN7 881 aa25.8■■□□□ 1.72
NUP54-209ENST00000510569 ADRA2BP18089 450 aa25.73■■□□□ 1.71
NUP54-209ENST00000510569 PIAS4Q8N2W9 510 aaPredicted RBP25.57■■□□□ 1.68
NUP54-209ENST00000510569 MSH5O43196 834 aa25.39■■□□□ 1.66
NUP54-209ENST00000510569 POTEDQ86YR6 584 aa24.04■■□□□ 1.44
NUP54-209ENST00000510569 SCAF1Q9H7N4 1312 aaKnown RBP23.58■■□□□ 1.36
NUP54-209ENST00000510569 MAPK8IP2Q13387 824 aaPredicted RBP23.49■■□□□ 1.35
NUP54-209ENST00000510569 PPP4R3CPQ6ZMV5 832 aa23.41■■□□□ 1.34
NUP54-209ENST00000510569 DMRT2Q9Y5R5 561 aa23.34■■□□□ 1.33
NUP54-209ENST00000510569 CNKSR2Q8WXI2 1034 aa22.89■■□□□ 1.25
NUP54-209ENST00000510569 HOXD11P31277 338 aaPredicted RBP22.67■■□□□ 1.22
NUP54-209ENST00000510569 NCBP3Q53F19 620 aaKnown RBP22.64■■□□□ 1.21
NUP54-209ENST00000510569 RNF216Q9NWF9 866 aaPredicted RBP22.59■■□□□ 1.21
NUP54-209ENST00000510569 NPM3O75607 178 aaKnown RBP22.32■■□□□ 1.16
NUP54-209ENST00000510569 KCNA4P22459 653 aa22.25■■□□□ 1.15
NUP54-209ENST00000510569 DCAF8L1A6NGE4 600 aa22.24■■□□□ 1.15
NUP54-209ENST00000510569 DNAJC5BQ9UF47 199 aa21.89■■□□□ 1.09
NUP54-209ENST00000510569 RNF39Q9H2S5 420 aa21.72■■□□□ 1.07
NUP54-209ENST00000510569 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.51■■□□□ 1.03
NUP54-209ENST00000510569 CACNB1Q02641 598 aaPredicted RBP21.47■■□□□ 1.03
NUP54-209ENST00000510569 C1QBPQ07021 282 aaKnown RBP21.41■■□□□ 1.02
NUP54-209ENST00000510569 SLC4A2P04920 1241 aa21.22■□□□□ 0.99
NUP54-209ENST00000510569 U3KPZ7 1027 aaPredicted RBP21.17■□□□□ 0.98
NUP54-209ENST00000510569 SLC4A1APQ9BWU0 796 aaKnown RBP21.08■□□□□ 0.97
NUP54-209ENST00000510569 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.71■□□□□ 0.91
NUP54-209ENST00000510569 HNRNPUL2Q1KMD3 747 aaKnown RBP20.71■□□□□ 0.91
NUP54-209ENST00000510569 SPINK5Q9NQ38 1064 aaPredicted RBP20.7■□□□□ 0.9
NUP54-209ENST00000510569 MYCNP04198 464 aaPredicted RBP20.66■□□□□ 0.9
NUP54-209ENST00000510569 FOXD4L1Q9NU39 408 aa20.66■□□□□ 0.9
NUP54-209ENST00000510569 APLP2Q06481 763 aa20.62■□□□□ 0.89
NUP54-209ENST00000510569 CAPN15O75808 1086 aa20.61■□□□□ 0.89
NUP54-209ENST00000510569 SAMD1Q6SPF0 538 aaPredicted RBP20.61■□□□□ 0.89
NUP54-209ENST00000510569 ZBTB22O15209 634 aa20.49■□□□□ 0.87
NUP54-209ENST00000510569 DSG3P32926 999 aa20.45■□□□□ 0.86
NUP54-209ENST00000510569 ZNF219Q9P2Y4 722 aaPredicted RBP20.43■□□□□ 0.86
NUP54-209ENST00000510569 TRHP20396 242 aaPredicted RBP20.37■□□□□ 0.85
NUP54-209ENST00000510569 ABCB7O75027 752 aa20.17■□□□□ 0.82
NUP54-209ENST00000510569 ATF5Q9Y2D1 282 aaPredicted RBP20.11■□□□□ 0.81
NUP54-209ENST00000510569 ATXN8OSP0DMR3 200 aa20.02■□□□□ 0.8
NUP54-209ENST00000510569 POLA2Q14181 598 aa19.95■□□□□ 0.78
NUP54-209ENST00000510569 CSRNP3Q8WYN3 585 aa19.9■□□□□ 0.78
NUP54-209ENST00000510569 EHMT2Q96KQ7 1210 aa19.81■□□□□ 0.76
NUP54-209ENST00000510569 ZBTB12Q9Y330 459 aaPredicted RBP19.64■□□□□ 0.73
NUP54-209ENST00000510569 RBM42Q9BTD8 480 aaKnown RBP19.52■□□□□ 0.72
NUP54-209ENST00000510569 OSCARQ8IYS5 282 aa19.32■□□□□ 0.68
NUP54-209ENST00000510569 FBLN2P98095 1184 aa19.29■□□□□ 0.68
NUP54-209ENST00000510569 MKRN4PQ13434 485 aaPredicted RBP19.24■□□□□ 0.67
NUP54-209ENST00000510569 AKT1S1Q96B36 256 aa19.16■□□□□ 0.66
NUP54-209ENST00000510569 SPDYE2BA6NHP3 402 aa19.06■□□□□ 0.64
NUP54-209ENST00000510569 SPDYE6P0CI01 402 aa19.06■□□□□ 0.64
NUP54-209ENST00000510569 SPDYE2Q495Y8 402 aa19.06■□□□□ 0.64
NUP54-209ENST00000510569 REM2Q8IYK8 340 aaPredicted RBP18.95■□□□□ 0.62
NUP54-209ENST00000510569 POTEHQ6S545 545 aa18.91■□□□□ 0.62
NUP54-209ENST00000510569 CHRDL2Q6WN34 429 aa18.91■□□□□ 0.62
NUP54-209ENST00000510569 SSUH2Q9Y2M2 353 aa18.88■□□□□ 0.61
NUP54-209ENST00000510569 ZNF692Q9BU19 519 aaPredicted RBP18.84■□□□□ 0.61
NUP54-209ENST00000510569 PITPNM1O00562 1244 aa18.76■□□□□ 0.59
NUP54-209ENST00000510569 SPDYE1Q8NFV5 336 aaPredicted RBP18.61■□□□□ 0.57
NUP54-209ENST00000510569 PABPN1Q86U42 306 aaKnown RBP eCLIP18.59■□□□□ 0.57
NUP54-209ENST00000510569 PIP4P2Q8N4L2 257 aa18.54■□□□□ 0.56
NUP54-209ENST00000510569 FXR2P51116 673 aaKnown RBP eCLIP18.52■□□□□ 0.56
NUP54-209ENST00000510569 SPDYE4A6NLX3 237 aa18.51■□□□□ 0.55
NUP54-209ENST00000510569 CLEC11AQ9Y240 323 aa18.48■□□□□ 0.55
NUP54-209ENST00000510569 PRR29P0C7W0 189 aa18.26■□□□□ 0.51
NUP54-209ENST00000510569 PRKAR2AP13861 404 aaKnown RBP18.24■□□□□ 0.51
NUP54-209ENST00000510569 PROM2Q8N271 834 aa18.23■□□□□ 0.51
NUP54-209ENST00000510569 STAG3Q9UJ98 1225 aa18.2■□□□□ 0.5
NUP54-209ENST00000510569 CHADLQ6NUI6 762 aa18.11■□□□□ 0.49
NUP54-209ENST00000510569 HAX1O00165 279 aa18.04■□□□□ 0.48
NUP54-209ENST00000510569 FKBP8Q14318 412 aa17.99■□□□□ 0.47
NUP54-209ENST00000510569 CREBZFQ9NS37 354 aa17.95■□□□□ 0.46
NUP54-209ENST00000510569 SP7Q8TDD2 431 aaPredicted RBP17.94■□□□□ 0.46
NUP54-209ENST00000510569 C19orf67A6NJJ6 358 aa17.92■□□□□ 0.46
NUP54-209ENST00000510569 FARP1Q9Y4F1 1045 aaPredicted RBP17.92■□□□□ 0.46
NUP54-209ENST00000510569 EVX2Q03828 476 aa17.88■□□□□ 0.45
NUP54-209ENST00000510569 MNX1P50219 401 aaPredicted RBP17.73■□□□□ 0.43
NUP54-209ENST00000510569 CD44P16070 742 aaKnown RBP17.7■□□□□ 0.42
NUP54-209ENST00000510569 NPM1P06748 294 aaKnown RBP eCLIP17.62■□□□□ 0.41
NUP54-209ENST00000510569 MIER1Q8N108 512 aa17.56■□□□□ 0.4
NUP54-209ENST00000510569 PLEKHG5O94827 1062 aa17.53■□□□□ 0.4
NUP54-209ENST00000510569 FBXO3Q9UK99 471 aa17.53■□□□□ 0.4
NUP54-209ENST00000510569 GABBR2O75899 941 aa17.51■□□□□ 0.39
NUP54-209ENST00000510569 ZNF579Q8NAF0 562 aaKnown RBP17.51■□□□□ 0.39
NUP54-209ENST00000510569 PLCD3Q8N3E9 789 aa17.49■□□□□ 0.39
NUP54-209ENST00000510569 ZRANB1Q9UGI0 708 aa17.49■□□□□ 0.39
NUP54-209ENST00000510569 PAK3O75914 559 aaPredicted RBP17.46■□□□□ 0.39
NUP54-209ENST00000510569 CLCN6P51797 869 aa17.44■□□□□ 0.38
NUP54-209ENST00000510569 ZBTB47Q9UFB7 747 aaPredicted RBP17.39■□□□□ 0.37
NUP54-209ENST00000510569 VASPP50552 380 aaPredicted RBP17.32■□□□□ 0.36
NUP54-209ENST00000510569 PHF12Q96QT6 1004 aa17.3■□□□□ 0.36
NUP54-209ENST00000510569 RASEFQ8IZ41 740 aa17.29■□□□□ 0.36
NUP54-209ENST00000510569 TSPYL2Q9H2G4 693 aaPredicted RBP17.27■□□□□ 0.36
NUP54-209ENST00000510569 NUBP1P53384 320 aa17.25■□□□□ 0.35
NUP54-209ENST00000510569 CCDC61Q9Y6R9 512 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms