RNA–Protein interactions for RNA: ENST00000558662.5

HMBOX1-212, Transcript of homeobox containing 1, humanhuman

TSL 5 BASIC

Gene HMBOX1, Length 1,765 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMBOX1-212ENST00000558662 NISCHQ9Y2I1 1504 aa30.24■■■□□ 2.43
HMBOX1-212ENST00000558662 HRCP23327 699 aa27.4■■□□□ 1.98
HMBOX1-212ENST00000558662 PELP1Q8IZL8 1130 aaKnown RBP27.3■■□□□ 1.96
HMBOX1-212ENST00000558662 MYT1Q01538 1121 aa26.55■■□□□ 1.84
HMBOX1-212ENST00000558662 DCAF1Q9Y4B6 1507 aa26.41■■□□□ 1.82
HMBOX1-212ENST00000558662 PCGF6Q9BYE7 350 aa26.34■■□□□ 1.81
HMBOX1-212ENST00000558662 MYO15BQ96JP2 1530 aa26.26■■□□□ 1.79
HMBOX1-212ENST00000558662 CHIC1Q5VXU3 224 aa26.18■■□□□ 1.78
HMBOX1-212ENST00000558662 PPARGC1BQ86YN6 1023 aaKnown RBP26.18■■□□□ 1.78
HMBOX1-212ENST00000558662 SUPT5HO00267 1087 aaKnown RBP26.15■■□□□ 1.78
HMBOX1-212ENST00000558662 CCDC180Q9P1Z9 1646 aa26.14■■□□□ 1.78
HMBOX1-212ENST00000558662 ZEB1P37275 1124 aaPredicted RBP26.1■■□□□ 1.77
HMBOX1-212ENST00000558662 SHROOM4Q9ULL8 1493 aa26.05■■□□□ 1.76
HMBOX1-212ENST00000558662 TRIM26Q12899 539 aaPredicted RBP25.9■■□□□ 1.74
HMBOX1-212ENST00000558662 ZCCHC6Q5VYS8 1495 aaKnown RBP25.84■■□□□ 1.73
HMBOX1-212ENST00000558662 SCAF1Q9H7N4 1312 aaKnown RBP25.76■■□□□ 1.71
HMBOX1-212ENST00000558662 ACIN1Q9UKV3 1341 aaKnown RBP25.32■■□□□ 1.64
HMBOX1-212ENST00000558662 LOC105371045A0A1W2PR82 267 aa25.19■■□□□ 1.62
HMBOX1-212ENST00000558662 CENPBP07199 599 aaPredicted RBP25.17■■□□□ 1.62
HMBOX1-212ENST00000558662 TTBK1Q5TCY1 1321 aaPredicted RBP25.08■■□□□ 1.61
HMBOX1-212ENST00000558662 NEUROD1Q13562 356 aa24.98■■□□□ 1.59
HMBOX1-212ENST00000558662 GTF3C3Q9Y5Q9 886 aa24.9■■□□□ 1.58
HMBOX1-212ENST00000558662 DIEXFQ68CQ4 756 aaKnown RBP24.7■■□□□ 1.54
HMBOX1-212ENST00000558662 ABCC9O60706 1549 aa24.63■■□□□ 1.53
HMBOX1-212ENST00000558662 CLSPNQ9HAW4 1339 aa24.51■■□□□ 1.51
HMBOX1-212ENST00000558662 CCER1Q8TC90 406 aaPredicted RBP24.49■■□□□ 1.51
HMBOX1-212ENST00000558662 TRIM41Q8WV44 630 aa24.48■■□□□ 1.51
HMBOX1-212ENST00000558662 RB1CC1Q8TDY2 1594 aa24.36■■□□□ 1.49
HMBOX1-212ENST00000558662 ZNF316A6NFI3 1004 aaPredicted RBP24.3■■□□□ 1.48
HMBOX1-212ENST00000558662 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.29■■□□□ 1.48
HMBOX1-212ENST00000558662 RSF1Q96T23 1441 aaPredicted RBP24.26■■□□□ 1.47
HMBOX1-212ENST00000558662 NACADO15069 1562 aa24.24■■□□□ 1.47
HMBOX1-212ENST00000558662 DCAF8L2P0C7V8 631 aa24.24■■□□□ 1.47
HMBOX1-212ENST00000558662 WRNQ14191 1432 aaPredicted RBP eCLIP24.23■■□□□ 1.47
HMBOX1-212ENST00000558662 ANP32EQ9BTT0 268 aa24.06■■□□□ 1.44
HMBOX1-212ENST00000558662 FAM9AQ8IZU1 332 aaPredicted RBP24.01■■□□□ 1.43
HMBOX1-212ENST00000558662 BCL11AQ9H165 835 aa23.96■■□□□ 1.43
HMBOX1-212ENST00000558662 MIER1Q8N108 512 aa23.88■■□□□ 1.41
HMBOX1-212ENST00000558662 YTHDC1Q96MU7 727 aaKnown RBP23.87■■□□□ 1.41
HMBOX1-212ENST00000558662 SCRIBQ14160 1630 aa23.81■■□□□ 1.4
HMBOX1-212ENST00000558662 SUPT16HQ9Y5B9 1047 aaKnown RBP23.78■■□□□ 1.4
HMBOX1-212ENST00000558662 TNIKQ9UKE5 1360 aa23.73■■□□□ 1.39
HMBOX1-212ENST00000558662 EIF4G1Q04637 1599 aaKnown RBP23.72■■□□□ 1.39
HMBOX1-212ENST00000558662 TSHZ2Q9NRE2 1034 aa23.72■■□□□ 1.39
HMBOX1-212ENST00000558662 CEP162Q5TB80 1403 aa23.7■■□□□ 1.38
HMBOX1-212ENST00000558662 EEA1Q15075 1411 aa23.68■■□□□ 1.38
HMBOX1-212ENST00000558662 UNC13AQ9UPW8 1703 aa23.56■■□□□ 1.36
HMBOX1-212ENST00000558662 BAZ1AQ9NRL2 1556 aaPredicted RBP23.54■■□□□ 1.36
HMBOX1-212ENST00000558662 EHMT2Q96KQ7 1210 aa23.52■■□□□ 1.36
HMBOX1-212ENST00000558662 CSRNP3Q8WYN3 585 aa23.5■■□□□ 1.35
HMBOX1-212ENST00000558662 MROH2BQ7Z745 1585 aa23.42■■□□□ 1.34
HMBOX1-212ENST00000558662 GOLGA3Q08378 1498 aa23.38■■□□□ 1.33
HMBOX1-212ENST00000558662 MYT1LQ9UL68 1186 aa23.38■■□□□ 1.33
HMBOX1-212ENST00000558662 WIZO95785 1651 aa23.36■■□□□ 1.33
HMBOX1-212ENST00000558662 BICRAQ9NZM4 1560 aa23.34■■□□□ 1.33
HMBOX1-212ENST00000558662 CECR2Q9BXF3 1484 aa23.27■■□□□ 1.32
HMBOX1-212ENST00000558662 CCDC88BA6NC98 1476 aa23.26■■□□□ 1.31
HMBOX1-212ENST00000558662 ERICH6Q7L0X2 663 aa23.24■■□□□ 1.31
HMBOX1-212ENST00000558662 KIF21BO75037 1637 aa23.22■■□□□ 1.31
HMBOX1-212ENST00000558662 TOP2AP11388 1531 aaKnown RBP23.2■■□□□ 1.3
HMBOX1-212ENST00000558662 ABCC8Q09428 1581 aa23.2■■□□□ 1.3
HMBOX1-212ENST00000558662 VPS8Q8N3P4 1428 aa23.18■■□□□ 1.3
HMBOX1-212ENST00000558662 RBM19Q9Y4C8 960 aaKnown RBP23.17■■□□□ 1.3
HMBOX1-212ENST00000558662 CEP164Q9UPV0 1460 aa23.16■■□□□ 1.3
HMBOX1-212ENST00000558662 HNRNPUL2Q1KMD3 747 aaKnown RBP23.14■■□□□ 1.3
HMBOX1-212ENST00000558662 BAZ1BQ9UIG0 1483 aaKnown RBP23.14■■□□□ 1.29
HMBOX1-212ENST00000558662 SOGA1O94964 1423 aa23.13■■□□□ 1.29
HMBOX1-212ENST00000558662 DHX57Q6P158 1386 aaKnown RBP23.13■■□□□ 1.29
HMBOX1-212ENST00000558662 FANCIQ9NVI1 1328 aa23.11■■□□□ 1.29
HMBOX1-212ENST00000558662 UBTFP17480 764 aaKnown RBP23.11■■□□□ 1.29
HMBOX1-212ENST00000558662 NEFLP07196 543 aa23.1■■□□□ 1.29
HMBOX1-212ENST00000558662 PRKCSHP14314 528 aaPredicted RBP23.06■■□□□ 1.28
HMBOX1-212ENST00000558662 CUX2O14529 1486 aa23.05■■□□□ 1.28
HMBOX1-212ENST00000558662 CLIP1P30622 1438 aa23.05■■□□□ 1.28
HMBOX1-212ENST00000558662 APLP2Q06481 763 aa23.04■■□□□ 1.28
HMBOX1-212ENST00000558662 SMARCA2P51531 1590 aa23.02■■□□□ 1.28
HMBOX1-212ENST00000558662 FKBP8Q14318 412 aa23■■□□□ 1.27
HMBOX1-212ENST00000558662 PABPN1Q86U42 306 aaKnown RBP eCLIP22.99■■□□□ 1.27
HMBOX1-212ENST00000558662 SMARCA4P51532 1647 aa22.9■■□□□ 1.26
HMBOX1-212ENST00000558662 CCER2I3L3R5 266 aa22.9■■□□□ 1.26
HMBOX1-212ENST00000558662 RUSC2Q8N2Y8 1516 aa22.89■■□□□ 1.25
HMBOX1-212ENST00000558662 ERICH6BQ5W0A0 696 aa22.86■■□□□ 1.25
HMBOX1-212ENST00000558662 RRBP1Q9P2E9 1410 aaKnown RBP22.85■■□□□ 1.25
HMBOX1-212ENST00000558662 MSH5O43196 834 aa22.83■■□□□ 1.24
HMBOX1-212ENST00000558662 BCANQ96GW7 911 aa22.82■■□□□ 1.24
HMBOX1-212ENST00000558662 CDK11AQ9UQ88 783 aaPredicted RBP22.77■■□□□ 1.24
HMBOX1-212ENST00000558662 TIMELESSQ9UNS1 1208 aa22.76■■□□□ 1.23
HMBOX1-212ENST00000558662 PEG3Q9GZU2 1588 aa22.72■■□□□ 1.23
HMBOX1-212ENST00000558662 ERICH3Q5RHP9 1530 aa22.68■■□□□ 1.22
HMBOX1-212ENST00000558662 DEKP35659 375 aaKnown RBP22.63■■□□□ 1.21
HMBOX1-212ENST00000558662 KCNH8Q96L42 1107 aa22.63■■□□□ 1.21
HMBOX1-212ENST00000558662 SYNJ1O43426 1573 aa22.63■■□□□ 1.21
HMBOX1-212ENST00000558662 PPP1R15AO75807 674 aaPredicted RBP22.63■■□□□ 1.21
HMBOX1-212ENST00000558662 MAPKBP1O60336 1514 aa22.6■■□□□ 1.21
HMBOX1-212ENST00000558662 ANP32CO43423 234 aa22.59■■□□□ 1.21
HMBOX1-212ENST00000558662 RAPGEF2Q9Y4G8 1499 aa22.59■■□□□ 1.21
HMBOX1-212ENST00000558662 CCNB3Q8WWL7 1395 aa22.59■■□□□ 1.21
HMBOX1-212ENST00000558662 ARAP1Q96P48 1450 aa22.53■■□□□ 1.2
HMBOX1-212ENST00000558662 ATAD2BQ9ULI0 1458 aa22.52■■□□□ 1.2
HMBOX1-212ENST00000558662 ITGAEP38570 1179 aa22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms