RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 AEBP2Q6ZN18 517 aaPredicted RBP27.23■■□□□ 1.95
SCFD1-219ENST00000556413 CHIC1Q5VXU3 224 aa26■■□□□ 1.75
SCFD1-219ENST00000556413 SENP3Q9H4L4 574 aaPredicted RBP23.17■■□□□ 1.3
SCFD1-219ENST00000556413 PHF23Q9BUL5 403 aaPredicted RBP22.91■■□□□ 1.26
SCFD1-219ENST00000556413 FOXD1Q16676 465 aa21.59■■□□□ 1.05
SCFD1-219ENST00000556413 PLPPR3Q6T4P5 718 aa20.84■□□□□ 0.93
SCFD1-219ENST00000556413 PPP6R1Q9UPN7 881 aa20.34■□□□□ 0.85
SCFD1-219ENST00000556413 ADRA2BP18089 450 aa20.28■□□□□ 0.84
SCFD1-219ENST00000556413 PIAS4Q8N2W9 510 aaPredicted RBP20.21■□□□□ 0.83
SCFD1-219ENST00000556413 MSH5O43196 834 aa20.11■□□□□ 0.81
SCFD1-219ENST00000556413 POTEDQ86YR6 584 aa19.37■□□□□ 0.69
SCFD1-219ENST00000556413 MAPK8IP2Q13387 824 aaPredicted RBP18.58■□□□□ 0.56
SCFD1-219ENST00000556413 SCAF1Q9H7N4 1312 aaKnown RBP18.5■□□□□ 0.55
SCFD1-219ENST00000556413 DMRT2Q9Y5R5 561 aa18.41■□□□□ 0.54
SCFD1-219ENST00000556413 PPP4R3CPQ6ZMV5 832 aa18.3■□□□□ 0.52
SCFD1-219ENST00000556413 CNKSR2Q8WXI2 1034 aa17.91■□□□□ 0.46
SCFD1-219ENST00000556413 HOXD11P31277 338 aaPredicted RBP17.8■□□□□ 0.44
SCFD1-219ENST00000556413 RNF216Q9NWF9 866 aaPredicted RBP17.7■□□□□ 0.42
SCFD1-219ENST00000556413 DCAF8L1A6NGE4 600 aa17.63■□□□□ 0.41
SCFD1-219ENST00000556413 NCBP3Q53F19 620 aaKnown RBP17.62■□□□□ 0.41
SCFD1-219ENST00000556413 NPM3O75607 178 aaKnown RBP17.4■□□□□ 0.38
SCFD1-219ENST00000556413 KCNA4P22459 653 aa17.22■□□□□ 0.35
SCFD1-219ENST00000556413 RNF39Q9H2S5 420 aa17.2■□□□□ 0.34
SCFD1-219ENST00000556413 CACNB1Q02641 598 aaPredicted RBP17.16■□□□□ 0.34
SCFD1-219ENST00000556413 DNAJC5BQ9UF47 199 aa17.14■□□□□ 0.33
SCFD1-219ENST00000556413 C1QBPQ07021 282 aaKnown RBP16.95■□□□□ 0.3
SCFD1-219ENST00000556413 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.95■□□□□ 0.3
SCFD1-219ENST00000556413 U3KPZ7 1027 aaPredicted RBP16.62■□□□□ 0.25
SCFD1-219ENST00000556413 SLC4A2P04920 1241 aa16.58■□□□□ 0.24
SCFD1-219ENST00000556413 SPINK5Q9NQ38 1064 aaPredicted RBP16.34■□□□□ 0.21
SCFD1-219ENST00000556413 CAPN15O75808 1086 aa16.28■□□□□ 0.2
SCFD1-219ENST00000556413 SLC4A1APQ9BWU0 796 aaKnown RBP16.27■□□□□ 0.2
SCFD1-219ENST00000556413 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.17■□□□□ 0.18
SCFD1-219ENST00000556413 DSG3P32926 999 aa16.17■□□□□ 0.18
SCFD1-219ENST00000556413 HNRNPUL2Q1KMD3 747 aaKnown RBP16.17■□□□□ 0.18
SCFD1-219ENST00000556413 APLP2Q06481 763 aa16.13■□□□□ 0.17
SCFD1-219ENST00000556413 SAMD1Q6SPF0 538 aaPredicted RBP16.1■□□□□ 0.17
SCFD1-219ENST00000556413 MYCNP04198 464 aaPredicted RBP16.07■□□□□ 0.16
SCFD1-219ENST00000556413 TRHP20396 242 aaPredicted RBP16.07■□□□□ 0.16
SCFD1-219ENST00000556413 ZNF219Q9P2Y4 722 aaPredicted RBP16.02■□□□□ 0.16
SCFD1-219ENST00000556413 FOXD4L1Q9NU39 408 aa15.99■□□□□ 0.15
SCFD1-219ENST00000556413 ABCB7O75027 752 aa15.93■□□□□ 0.14
SCFD1-219ENST00000556413 ZBTB22O15209 634 aa15.85■□□□□ 0.13
SCFD1-219ENST00000556413 ATF5Q9Y2D1 282 aaPredicted RBP15.72■□□□□ 0.11
SCFD1-219ENST00000556413 POLA2Q14181 598 aa15.69■□□□□ 0.1
SCFD1-219ENST00000556413 ATXN8OSP0DMR3 200 aa15.49■□□□□ 0.07
SCFD1-219ENST00000556413 RBM42Q9BTD8 480 aaKnown RBP15.39■□□□□ 0.05
SCFD1-219ENST00000556413 ZBTB12Q9Y330 459 aaPredicted RBP15.35■□□□□ 0.05
SCFD1-219ENST00000556413 CSRNP3Q8WYN3 585 aa15.26■□□□□ 0.03
SCFD1-219ENST00000556413 POTEHQ6S545 545 aa15.21■□□□□ 0.03
SCFD1-219ENST00000556413 OSCARQ8IYS5 282 aa15.17■□□□□ 0.02
SCFD1-219ENST00000556413 EHMT2Q96KQ7 1210 aa15.13■□□□□ 0.01
SCFD1-219ENST00000556413 AKT1S1Q96B36 256 aa15.09■□□□□ 0.01
SCFD1-219ENST00000556413 FBLN2P98095 1184 aa15.05■□□□□ -0
SCFD1-219ENST00000556413 CHRDL2Q6WN34 429 aa15.01□□□□□ -0.01
SCFD1-219ENST00000556413 MKRN4PQ13434 485 aaPredicted RBP15□□□□□ -0.01
SCFD1-219ENST00000556413 REM2Q8IYK8 340 aaPredicted RBP14.96□□□□□ -0.01
SCFD1-219ENST00000556413 SPDYE2BA6NHP3 402 aa14.9□□□□□ -0.02
SCFD1-219ENST00000556413 SPDYE6P0CI01 402 aa14.9□□□□□ -0.02
SCFD1-219ENST00000556413 SPDYE2Q495Y8 402 aa14.9□□□□□ -0.02
SCFD1-219ENST00000556413 PITPNM1O00562 1244 aa14.79□□□□□ -0.04
SCFD1-219ENST00000556413 ZNF692Q9BU19 519 aaPredicted RBP14.75□□□□□ -0.05
SCFD1-219ENST00000556413 SSUH2Q9Y2M2 353 aa14.73□□□□□ -0.05
SCFD1-219ENST00000556413 PIP4P2Q8N4L2 257 aa14.7□□□□□ -0.06
SCFD1-219ENST00000556413 FXR2P51116 673 aaKnown RBP eCLIP14.64□□□□□ -0.07
SCFD1-219ENST00000556413 SPDYE1Q8NFV5 336 aaPredicted RBP14.6□□□□□ -0.07
SCFD1-219ENST00000556413 CLEC11AQ9Y240 323 aa14.57□□□□□ -0.08
SCFD1-219ENST00000556413 PABPN1Q86U42 306 aaKnown RBP eCLIP14.56□□□□□ -0.08
SCFD1-219ENST00000556413 PRKAR2AP13861 404 aaKnown RBP14.41□□□□□ -0.1
SCFD1-219ENST00000556413 HAX1O00165 279 aa14.37□□□□□ -0.11
SCFD1-219ENST00000556413 PRR29P0C7W0 189 aa14.36□□□□□ -0.11
SCFD1-219ENST00000556413 SPDYE4A6NLX3 237 aa14.35□□□□□ -0.11
SCFD1-219ENST00000556413 SP7Q8TDD2 431 aaPredicted RBP14.33□□□□□ -0.12
SCFD1-219ENST00000556413 CHADLQ6NUI6 762 aa14.29□□□□□ -0.12
SCFD1-219ENST00000556413 EVX2Q03828 476 aa14.24□□□□□ -0.13
SCFD1-219ENST00000556413 STAG3Q9UJ98 1225 aa14.17□□□□□ -0.14
SCFD1-219ENST00000556413 C19orf67A6NJJ6 358 aa14.16□□□□□ -0.14
SCFD1-219ENST00000556413 FARP1Q9Y4F1 1045 aaPredicted RBP14.09□□□□□ -0.15
SCFD1-219ENST00000556413 CREBZFQ9NS37 354 aa14.05□□□□□ -0.16
SCFD1-219ENST00000556413 PROM2Q8N271 834 aa14.04□□□□□ -0.16
SCFD1-219ENST00000556413 CD44P16070 742 aaKnown RBP13.96□□□□□ -0.17
SCFD1-219ENST00000556413 GABBR2O75899 941 aa13.91□□□□□ -0.18
SCFD1-219ENST00000556413 MNX1P50219 401 aaPredicted RBP13.84□□□□□ -0.19
SCFD1-219ENST00000556413 FKBP8Q14318 412 aa13.81□□□□□ -0.2
SCFD1-219ENST00000556413 ZRANB1Q9UGI0 708 aa13.79□□□□□ -0.2
SCFD1-219ENST00000556413 NPM1P06748 294 aaKnown RBP eCLIP13.77□□□□□ -0.21
SCFD1-219ENST00000556413 ZNF579Q8NAF0 562 aaKnown RBP13.75□□□□□ -0.21
SCFD1-219ENST00000556413 CLCN6P51797 869 aa13.72□□□□□ -0.21
SCFD1-219ENST00000556413 PAK3O75914 559 aaPredicted RBP13.69□□□□□ -0.22
SCFD1-219ENST00000556413 MIER1Q8N108 512 aa13.68□□□□□ -0.22
SCFD1-219ENST00000556413 POTEIP0CG38 1075 aa13.63□□□□□ -0.23
SCFD1-219ENST00000556413 PLEKHG5O94827 1062 aa13.62□□□□□ -0.23
SCFD1-219ENST00000556413 PHF12Q96QT6 1004 aa13.62□□□□□ -0.23
SCFD1-219ENST00000556413 GALR2O43603 387 aaPredicted RBP13.59□□□□□ -0.23
SCFD1-219ENST00000556413 PLCD3Q8N3E9 789 aa13.58□□□□□ -0.24
SCFD1-219ENST00000556413 TSPYL2Q9H2G4 693 aaPredicted RBP13.56□□□□□ -0.24
SCFD1-219ENST00000556413 DCBLD2Q96PD2 775 aa13.55□□□□□ -0.24
SCFD1-219ENST00000556413 RASEFQ8IZ41 740 aa13.48□□□□□ -0.25
SCFD1-219ENST00000556413 CCDC61Q9Y6R9 512 aa13.48□□□□□ -0.25
SCFD1-219ENST00000556413 FBXO3Q9UK99 471 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms