Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC28.47■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC28.47■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC28.47■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 AC087239.1-201ENST00000622671 572 ntBASIC28.47■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC28.46■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC28.46■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 YBX1P1-201ENST00000445822 960 ntBASIC28.46■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC28.46■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC28.46■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC28.46■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC28.46■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC28.46■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC28.45■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC28.45■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC28.45■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC28.45■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC28.45■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC28.45■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC28.45■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC28.45■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC28.44■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC28.44■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC28.44■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC28.44■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC28.44■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC28.44■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC28.43■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC28.43■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC28.43■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC28.43■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC28.43■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC28.43■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC28.43■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 AC068587.7-201ENST00000641602 218 ntBASIC28.43■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC28.42■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC28.42■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC28.42■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC28.42■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC28.41■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC28.41■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 AC105233.4-201ENST00000642045 216 ntBASIC28.41■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC28.41■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC28.41■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC28.41■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC28.4■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC28.4■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC28.4■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC28.39■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC28.39■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC28.39■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC28.39■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC28.39■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC28.39■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 PARP1-210ENST00000629232 477 ntTSL 5 BASIC28.39■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC28.39■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
SENP3-EIF4A1A0A087X0R7 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC28.39■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 AC003102.1-202ENST00000563394 1796 ntBASIC28.39■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC28.39■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC28.38■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC28.38■■■□□ 2.13
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms