Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC105233.4-201ENST00000642045 216 ntBASIC21.21■□□□□ 0.99
VPS9D1Q9Y2B5 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VPS9D1Q9Y2B5 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.21■□□□□ 0.99
VPS9D1Q9Y2B5 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
VPS9D1Q9Y2B5 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
VPS9D1Q9Y2B5 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC21.21■□□□□ 0.99
VPS9D1Q9Y2B5 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
VPS9D1Q9Y2B5 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VPS9D1Q9Y2B5 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VPS9D1Q9Y2B5 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC21.2■□□□□ 0.98
VPS9D1Q9Y2B5 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
VPS9D1Q9Y2B5 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VPS9D1Q9Y2B5 AP006587.3-201ENST00000525742 1516 ntBASIC21.2■□□□□ 0.98
VPS9D1Q9Y2B5 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
VPS9D1Q9Y2B5 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC21.2■□□□□ 0.98
VPS9D1Q9Y2B5 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VPS9D1Q9Y2B5 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
VPS9D1Q9Y2B5 EBPL-204ENST00000378272 766 ntTSL 3 BASIC21.2■□□□□ 0.98
VPS9D1Q9Y2B5 MIR572-201ENST00000384983 95 ntBASIC21.2■□□□□ 0.98
VPS9D1Q9Y2B5 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC21.2■□□□□ 0.98
VPS9D1Q9Y2B5 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC21.2■□□□□ 0.98
VPS9D1Q9Y2B5 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
VPS9D1Q9Y2B5 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
VPS9D1Q9Y2B5 AL136967.2-201ENST00000623968 743 ntBASIC21.2■□□□□ 0.98
VPS9D1Q9Y2B5 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VPS9D1Q9Y2B5 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
VPS9D1Q9Y2B5 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC21.2■□□□□ 0.98
VPS9D1Q9Y2B5 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
VPS9D1Q9Y2B5 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
VPS9D1Q9Y2B5 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
VPS9D1Q9Y2B5 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.2■□□□□ 0.98
VPS9D1Q9Y2B5 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC21.19■□□□□ 0.98
VPS9D1Q9Y2B5 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VPS9D1Q9Y2B5 CLDN5-201ENST00000403084 2357 ntBASIC21.19■□□□□ 0.98
VPS9D1Q9Y2B5 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VPS9D1Q9Y2B5 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21.19■□□□□ 0.98
VPS9D1Q9Y2B5 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
VPS9D1Q9Y2B5 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.19■□□□□ 0.98
VPS9D1Q9Y2B5 AL031432.3-201ENST00000607698 485 ntBASIC21.19■□□□□ 0.98
VPS9D1Q9Y2B5 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
VPS9D1Q9Y2B5 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VPS9D1Q9Y2B5 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
VPS9D1Q9Y2B5 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC21.18■□□□□ 0.98
VPS9D1Q9Y2B5 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC21.18■□□□□ 0.98
VPS9D1Q9Y2B5 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VPS9D1Q9Y2B5 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VPS9D1Q9Y2B5 AC026471.6-201ENST00000622954 1905 ntBASIC21.18■□□□□ 0.98
VPS9D1Q9Y2B5 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC21.18■□□□□ 0.98
VPS9D1Q9Y2B5 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
VPS9D1Q9Y2B5 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC21.18■□□□□ 0.98
VPS9D1Q9Y2B5 ASL-203ENST00000380839 1765 ntTSL 5 BASIC21.18■□□□□ 0.98
VPS9D1Q9Y2B5 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
VPS9D1Q9Y2B5 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC21.17■□□□□ 0.98
VPS9D1Q9Y2B5 ME2-206ENST00000638410 2289 ntTSL 5 BASIC21.17■□□□□ 0.98
VPS9D1Q9Y2B5 ME2-210ENST00000639255 2262 ntTSL 5 BASIC21.17■□□□□ 0.98
VPS9D1Q9Y2B5 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC21.17■□□□□ 0.98
VPS9D1Q9Y2B5 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VPS9D1Q9Y2B5 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
VPS9D1Q9Y2B5 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC21.17■□□□□ 0.98
VPS9D1Q9Y2B5 SUDS3P1-201ENST00000505831 966 ntBASIC21.17■□□□□ 0.98
VPS9D1Q9Y2B5 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
VPS9D1Q9Y2B5 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
VPS9D1Q9Y2B5 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
VPS9D1Q9Y2B5 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
VPS9D1Q9Y2B5 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS9D1Q9Y2B5 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS9D1Q9Y2B5 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS9D1Q9Y2B5 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS9D1Q9Y2B5 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
VPS9D1Q9Y2B5 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC21.16■□□□□ 0.98
VPS9D1Q9Y2B5 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC21.16■□□□□ 0.98
VPS9D1Q9Y2B5 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC21.16■□□□□ 0.98
VPS9D1Q9Y2B5 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS9D1Q9Y2B5 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC21.16■□□□□ 0.98
VPS9D1Q9Y2B5 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VPS9D1Q9Y2B5 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
VPS9D1Q9Y2B5 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS9D1Q9Y2B5 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
VPS9D1Q9Y2B5 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS9D1Q9Y2B5 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VPS9D1Q9Y2B5 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
VPS9D1Q9Y2B5 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC21.15■□□□□ 0.98
VPS9D1Q9Y2B5 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS9D1Q9Y2B5 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS9D1Q9Y2B5 AC142381.2-201ENST00000566120 298 ntBASIC21.15■□□□□ 0.98
VPS9D1Q9Y2B5 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS9D1Q9Y2B5 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS9D1Q9Y2B5 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
VPS9D1Q9Y2B5 AC003102.1-202ENST00000563394 1796 ntBASIC21.15■□□□□ 0.98
VPS9D1Q9Y2B5 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS9D1Q9Y2B5 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
VPS9D1Q9Y2B5 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
VPS9D1Q9Y2B5 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
VPS9D1Q9Y2B5 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
VPS9D1Q9Y2B5 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
VPS9D1Q9Y2B5 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
VPS9D1Q9Y2B5 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
VPS9D1Q9Y2B5 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
VPS9D1Q9Y2B5 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
VPS9D1Q9Y2B5 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms