Protein–RNA interactions for Protein: Q9H9S0

NANOG, Homeobox protein NANOG, humanhuman

Predictions only

Length 305 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NANOGQ9H9S0 AC245100.8-202ENST00000629247 1058 ntBASIC20.28■□□□□ 0.84
NANOGQ9H9S0 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
NANOGQ9H9S0 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
NANOGQ9H9S0 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
NANOGQ9H9S0 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NANOGQ9H9S0 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
NANOGQ9H9S0 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
NANOGQ9H9S0 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
NANOGQ9H9S0 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NANOGQ9H9S0 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NANOGQ9H9S0 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NANOGQ9H9S0 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NANOGQ9H9S0 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.27■□□□□ 0.84
NANOGQ9H9S0 AL117332.1-201ENST00000622628 974 ntBASIC20.27■□□□□ 0.84
NANOGQ9H9S0 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NANOGQ9H9S0 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NANOGQ9H9S0 LINC01521-201ENST00000504184 1943 ntBASIC20.27■□□□□ 0.84
NANOGQ9H9S0 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.27■□□□□ 0.84
NANOGQ9H9S0 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.27■□□□□ 0.83
NANOGQ9H9S0 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.27■□□□□ 0.83
NANOGQ9H9S0 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.26■□□□□ 0.83
NANOGQ9H9S0 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.26■□□□□ 0.83
NANOGQ9H9S0 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.26■□□□□ 0.83
NANOGQ9H9S0 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
NANOGQ9H9S0 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.26■□□□□ 0.83
NANOGQ9H9S0 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NANOGQ9H9S0 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
NANOGQ9H9S0 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NANOGQ9H9S0 AC239859.2-201ENST00000444165 318 ntBASIC20.26■□□□□ 0.83
NANOGQ9H9S0 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
NANOGQ9H9S0 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NANOGQ9H9S0 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.26■□□□□ 0.83
NANOGQ9H9S0 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.26■□□□□ 0.83
NANOGQ9H9S0 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
NANOGQ9H9S0 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NANOGQ9H9S0 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
NANOGQ9H9S0 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.25■□□□□ 0.83
NANOGQ9H9S0 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.25■□□□□ 0.83
NANOGQ9H9S0 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NANOGQ9H9S0 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.25■□□□□ 0.83
NANOGQ9H9S0 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NANOGQ9H9S0 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NANOGQ9H9S0 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.25■□□□□ 0.83
NANOGQ9H9S0 TSPY9P-201ENST00000440215 945 ntBASIC20.25■□□□□ 0.83
NANOGQ9H9S0 TSPY11P-201ENST00000442607 1045 ntBASIC20.25■□□□□ 0.83
NANOGQ9H9S0 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
NANOGQ9H9S0 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
NANOGQ9H9S0 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.25■□□□□ 0.83
NANOGQ9H9S0 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
NANOGQ9H9S0 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NANOGQ9H9S0 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.25■□□□□ 0.83
NANOGQ9H9S0 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
NANOGQ9H9S0 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.25■□□□□ 0.83
NANOGQ9H9S0 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NANOGQ9H9S0 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.25■□□□□ 0.83
NANOGQ9H9S0 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
NANOGQ9H9S0 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NANOGQ9H9S0 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NANOGQ9H9S0 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.24■□□□□ 0.83
NANOGQ9H9S0 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NANOGQ9H9S0 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
NANOGQ9H9S0 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NANOGQ9H9S0 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
NANOGQ9H9S0 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
NANOGQ9H9S0 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
NANOGQ9H9S0 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NANOGQ9H9S0 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC20.24■□□□□ 0.83
NANOGQ9H9S0 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20.24■□□□□ 0.83
NANOGQ9H9S0 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
NANOGQ9H9S0 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.24■□□□□ 0.83
NANOGQ9H9S0 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NANOGQ9H9S0 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.24■□□□□ 0.83
NANOGQ9H9S0 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NANOGQ9H9S0 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
NANOGQ9H9S0 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NANOGQ9H9S0 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NANOGQ9H9S0 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NANOGQ9H9S0 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
NANOGQ9H9S0 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
NANOGQ9H9S0 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
NANOGQ9H9S0 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
NANOGQ9H9S0 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NANOGQ9H9S0 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
NANOGQ9H9S0 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.23■□□□□ 0.83
NANOGQ9H9S0 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.23■□□□□ 0.83
NANOGQ9H9S0 pRNA.6-201ENST00000610482 90 ntBASIC20.23■□□□□ 0.83
NANOGQ9H9S0 pRNA.5-201ENST00000612139 90 ntBASIC20.23■□□□□ 0.83
NANOGQ9H9S0 pRNA.11-201ENST00000618423 90 ntBASIC20.23■□□□□ 0.83
NANOGQ9H9S0 pRNA.13-201ENST00000619112 90 ntBASIC20.23■□□□□ 0.83
NANOGQ9H9S0 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
NANOGQ9H9S0 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
NANOGQ9H9S0 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NANOGQ9H9S0 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
NANOGQ9H9S0 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NANOGQ9H9S0 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NANOGQ9H9S0 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
NANOGQ9H9S0 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
NANOGQ9H9S0 AC006455.2-201ENST00000429931 906 ntBASIC20.22■□□□□ 0.83
NANOGQ9H9S0 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
NANOGQ9H9S0 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms