Protein–RNA interactions for Protein: A2RU48

SMCO3, Single-pass membrane and coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO3A2RU48 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SMCO3A2RU48 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMCO3A2RU48 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SMCO3A2RU48 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC17.38■□□□□ 0.37
SMCO3A2RU48 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC17.38■□□□□ 0.37
SMCO3A2RU48 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
SMCO3A2RU48 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMCO3A2RU48 IDNK-201ENST00000376417 511 ntTSL 5 BASIC17.38■□□□□ 0.37
SMCO3A2RU48 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMCO3A2RU48 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC17.38■□□□□ 0.37
SMCO3A2RU48 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC17.38■□□□□ 0.37
SMCO3A2RU48 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMCO3A2RU48 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
SMCO3A2RU48 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
SMCO3A2RU48 LINC01529-204ENST00000636474 1715 ntBASIC17.38■□□□□ 0.37
SMCO3A2RU48 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMCO3A2RU48 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.38■□□□□ 0.37
SMCO3A2RU48 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
SMCO3A2RU48 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC17.37■□□□□ 0.37
SMCO3A2RU48 AC010542.4-201ENST00000563151 1910 ntBASIC17.37■□□□□ 0.37
SMCO3A2RU48 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SMCO3A2RU48 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SMCO3A2RU48 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC17.37■□□□□ 0.37
SMCO3A2RU48 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMCO3A2RU48 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC17.37■□□□□ 0.37
SMCO3A2RU48 HSD17B1P1-201ENST00000590052 955 ntBASIC17.37■□□□□ 0.37
SMCO3A2RU48 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC17.37■□□□□ 0.37
SMCO3A2RU48 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC17.37■□□□□ 0.37
SMCO3A2RU48 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
SMCO3A2RU48 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMCO3A2RU48 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMCO3A2RU48 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC17.37■□□□□ 0.37
SMCO3A2RU48 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
SMCO3A2RU48 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMCO3A2RU48 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMCO3A2RU48 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC17.36■□□□□ 0.37
SMCO3A2RU48 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC17.36■□□□□ 0.37
SMCO3A2RU48 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC17.36■□□□□ 0.37
SMCO3A2RU48 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.36■□□□□ 0.37
SMCO3A2RU48 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMCO3A2RU48 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SMCO3A2RU48 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
SMCO3A2RU48 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMCO3A2RU48 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.36■□□□□ 0.37
SMCO3A2RU48 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMCO3A2RU48 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMCO3A2RU48 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC17.36■□□□□ 0.37
SMCO3A2RU48 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMCO3A2RU48 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMCO3A2RU48 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMCO3A2RU48 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.35■□□□□ 0.37
SMCO3A2RU48 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
SMCO3A2RU48 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SMCO3A2RU48 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC17.35■□□□□ 0.37
SMCO3A2RU48 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SMCO3A2RU48 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMCO3A2RU48 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SMCO3A2RU48 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SMCO3A2RU48 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMCO3A2RU48 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMCO3A2RU48 BEX3-202ENST00000372634 753 ntTSL 2 BASIC17.35■□□□□ 0.37
SMCO3A2RU48 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SMCO3A2RU48 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC17.35■□□□□ 0.37
SMCO3A2RU48 AC010980.1-201ENST00000587192 1142 ntBASIC17.35■□□□□ 0.37
SMCO3A2RU48 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC17.35■□□□□ 0.37
SMCO3A2RU48 AC074183.2-201ENST00000623112 922 ntBASIC17.35■□□□□ 0.37
SMCO3A2RU48 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMCO3A2RU48 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SMCO3A2RU48 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC17.35■□□□□ 0.37
SMCO3A2RU48 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMCO3A2RU48 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SMCO3A2RU48 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
SMCO3A2RU48 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMCO3A2RU48 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
SMCO3A2RU48 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
SMCO3A2RU48 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.34■□□□□ 0.37
SMCO3A2RU48 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SMCO3A2RU48 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC17.34■□□□□ 0.37
SMCO3A2RU48 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SMCO3A2RU48 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC17.34■□□□□ 0.37
SMCO3A2RU48 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC17.34■□□□□ 0.37
SMCO3A2RU48 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC17.34■□□□□ 0.37
SMCO3A2RU48 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SMCO3A2RU48 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC17.34■□□□□ 0.37
SMCO3A2RU48 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
SMCO3A2RU48 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
SMCO3A2RU48 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC17.34■□□□□ 0.37
SMCO3A2RU48 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
SMCO3A2RU48 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
SMCO3A2RU48 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC17.33■□□□□ 0.37
SMCO3A2RU48 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SMCO3A2RU48 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SMCO3A2RU48 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
SMCO3A2RU48 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SMCO3A2RU48 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SMCO3A2RU48 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SMCO3A2RU48 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
SMCO3A2RU48 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SMCO3A2RU48 SNX5-217ENST00000606557 1087 ntBASIC17.33■□□□□ 0.36
SMCO3A2RU48 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms