Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC24.76■■□□□ 1.55
PCDHA1Q9Y5I3 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
PCDHA1Q9Y5I3 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
PCDHA1Q9Y5I3 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC24.76■■□□□ 1.55
PCDHA1Q9Y5I3 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
PCDHA1Q9Y5I3 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC24.75■■□□□ 1.55
PCDHA1Q9Y5I3 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC24.75■■□□□ 1.55
PCDHA1Q9Y5I3 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC24.75■■□□□ 1.55
PCDHA1Q9Y5I3 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC24.75■■□□□ 1.55
PCDHA1Q9Y5I3 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
PCDHA1Q9Y5I3 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC24.75■■□□□ 1.55
PCDHA1Q9Y5I3 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC24.75■■□□□ 1.55
PCDHA1Q9Y5I3 GALNS-213ENST00000569433 723 ntTSL 3 BASIC24.75■■□□□ 1.55
PCDHA1Q9Y5I3 IKBKGP1-201ENST00000612193 1073 ntBASIC24.75■■□□□ 1.55
PCDHA1Q9Y5I3 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
PCDHA1Q9Y5I3 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
PCDHA1Q9Y5I3 AC004854.2-201ENST00000608450 1441 ntBASIC24.75■■□□□ 1.55
PCDHA1Q9Y5I3 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
PCDHA1Q9Y5I3 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
PCDHA1Q9Y5I3 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
PCDHA1Q9Y5I3 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC24.74■■□□□ 1.55
PCDHA1Q9Y5I3 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC24.74■■□□□ 1.55
PCDHA1Q9Y5I3 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC24.74■■□□□ 1.55
PCDHA1Q9Y5I3 AL034346.1-201ENST00000568244 1277 ntBASIC24.74■■□□□ 1.55
PCDHA1Q9Y5I3 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC24.74■■□□□ 1.55
PCDHA1Q9Y5I3 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
PCDHA1Q9Y5I3 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
PCDHA1Q9Y5I3 AC055733.4-201ENST00000638462 1354 ntBASIC24.74■■□□□ 1.55
PCDHA1Q9Y5I3 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
PCDHA1Q9Y5I3 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC24.74■■□□□ 1.55
PCDHA1Q9Y5I3 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
PCDHA1Q9Y5I3 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC24.74■■□□□ 1.55
PCDHA1Q9Y5I3 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC24.74■■□□□ 1.55
PCDHA1Q9Y5I3 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
PCDHA1Q9Y5I3 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
PCDHA1Q9Y5I3 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
PCDHA1Q9Y5I3 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC24.73■■□□□ 1.55
PCDHA1Q9Y5I3 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC24.73■■□□□ 1.55
PCDHA1Q9Y5I3 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC24.73■■□□□ 1.55
PCDHA1Q9Y5I3 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC24.73■■□□□ 1.55
PCDHA1Q9Y5I3 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC24.73■■□□□ 1.55
PCDHA1Q9Y5I3 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC24.73■■□□□ 1.55
PCDHA1Q9Y5I3 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC24.73■■□□□ 1.55
PCDHA1Q9Y5I3 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC24.73■■□□□ 1.55
PCDHA1Q9Y5I3 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC24.73■■□□□ 1.55
PCDHA1Q9Y5I3 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC24.73■■□□□ 1.55
PCDHA1Q9Y5I3 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
PCDHA1Q9Y5I3 AC080038.3-201ENST00000623346 1952 ntBASIC24.73■■□□□ 1.55
PCDHA1Q9Y5I3 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC24.73■■□□□ 1.55
PCDHA1Q9Y5I3 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC24.73■■□□□ 1.55
PCDHA1Q9Y5I3 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC24.72■■□□□ 1.55
PCDHA1Q9Y5I3 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
PCDHA1Q9Y5I3 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
PCDHA1Q9Y5I3 AC127496.7-201ENST00000625110 1798 ntBASIC24.72■■□□□ 1.55
PCDHA1Q9Y5I3 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
PCDHA1Q9Y5I3 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
PCDHA1Q9Y5I3 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC24.72■■□□□ 1.55
PCDHA1Q9Y5I3 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
PCDHA1Q9Y5I3 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC24.72■■□□□ 1.55
PCDHA1Q9Y5I3 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC24.72■■□□□ 1.55
PCDHA1Q9Y5I3 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC24.72■■□□□ 1.55
PCDHA1Q9Y5I3 GALC-202ENST00000393568 2054 ntTSL 2 BASIC24.72■■□□□ 1.55
PCDHA1Q9Y5I3 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
PCDHA1Q9Y5I3 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
PCDHA1Q9Y5I3 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
PCDHA1Q9Y5I3 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
PCDHA1Q9Y5I3 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
PCDHA1Q9Y5I3 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
PCDHA1Q9Y5I3 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
PCDHA1Q9Y5I3 LTK-203ENST00000453182 2412 ntTSL 2 BASIC24.71■■□□□ 1.55
PCDHA1Q9Y5I3 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
PCDHA1Q9Y5I3 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC24.71■■□□□ 1.55
PCDHA1Q9Y5I3 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC24.71■■□□□ 1.55
PCDHA1Q9Y5I3 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
PCDHA1Q9Y5I3 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
PCDHA1Q9Y5I3 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC24.71■■□□□ 1.55
PCDHA1Q9Y5I3 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
PCDHA1Q9Y5I3 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
PCDHA1Q9Y5I3 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
PCDHA1Q9Y5I3 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
PCDHA1Q9Y5I3 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC24.7■■□□□ 1.54
PCDHA1Q9Y5I3 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC24.7■■□□□ 1.54
PCDHA1Q9Y5I3 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC24.7■■□□□ 1.54
PCDHA1Q9Y5I3 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC24.7■■□□□ 1.54
PCDHA1Q9Y5I3 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
PCDHA1Q9Y5I3 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC24.7■■□□□ 1.54
PCDHA1Q9Y5I3 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
PCDHA1Q9Y5I3 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
PCDHA1Q9Y5I3 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
PCDHA1Q9Y5I3 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
PCDHA1Q9Y5I3 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
PCDHA1Q9Y5I3 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC24.69■■□□□ 1.54
PCDHA1Q9Y5I3 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
PCDHA1Q9Y5I3 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC24.69■■□□□ 1.54
PCDHA1Q9Y5I3 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC24.69■■□□□ 1.54
PCDHA1Q9Y5I3 AC092437.1-201ENST00000624794 1048 ntBASIC24.69■■□□□ 1.54
PCDHA1Q9Y5I3 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
PCDHA1Q9Y5I3 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
PCDHA1Q9Y5I3 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC24.69■■□□□ 1.54
PCDHA1Q9Y5I3 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms