Protein–RNA interactions for Protein: Q9H321

VCX3B, Variable charge X-linked protein 3B, humanhuman

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3BQ9H321 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VCX3BQ9H321 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VCX3BQ9H321 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
VCX3BQ9H321 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.55■□□□□ 0.88
VCX3BQ9H321 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
VCX3BQ9H321 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VCX3BQ9H321 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VCX3BQ9H321 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VCX3BQ9H321 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.54■□□□□ 0.88
VCX3BQ9H321 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
VCX3BQ9H321 AC093536.1-201ENST00000569153 554 ntBASIC20.54■□□□□ 0.88
VCX3BQ9H321 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
VCX3BQ9H321 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VCX3BQ9H321 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
VCX3BQ9H321 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC20.54■□□□□ 0.88
VCX3BQ9H321 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
VCX3BQ9H321 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC20.53■□□□□ 0.88
VCX3BQ9H321 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
VCX3BQ9H321 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VCX3BQ9H321 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VCX3BQ9H321 AL162393.1-201ENST00000437852 946 ntBASIC20.53■□□□□ 0.88
VCX3BQ9H321 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VCX3BQ9H321 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC20.53■□□□□ 0.88
VCX3BQ9H321 HGH1-207ENST00000628266 258 ntTSL 5 BASIC20.53■□□□□ 0.88
VCX3BQ9H321 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
VCX3BQ9H321 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VCX3BQ9H321 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
VCX3BQ9H321 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VCX3BQ9H321 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.53■□□□□ 0.88
VCX3BQ9H321 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VCX3BQ9H321 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
VCX3BQ9H321 AC131274.2-201ENST00000580697 1507 ntBASIC20.53■□□□□ 0.88
VCX3BQ9H321 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
VCX3BQ9H321 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.52■□□□□ 0.88
VCX3BQ9H321 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.52■□□□□ 0.88
VCX3BQ9H321 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.52■□□□□ 0.88
VCX3BQ9H321 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VCX3BQ9H321 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
VCX3BQ9H321 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VCX3BQ9H321 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VCX3BQ9H321 AC144652.1-201ENST00000609974 1624 ntBASIC20.52■□□□□ 0.88
VCX3BQ9H321 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.52■□□□□ 0.87
VCX3BQ9H321 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.52■□□□□ 0.87
VCX3BQ9H321 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VCX3BQ9H321 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VCX3BQ9H321 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VCX3BQ9H321 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VCX3BQ9H321 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VCX3BQ9H321 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
VCX3BQ9H321 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.51■□□□□ 0.87
VCX3BQ9H321 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VCX3BQ9H321 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
VCX3BQ9H321 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VCX3BQ9H321 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VCX3BQ9H321 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.51■□□□□ 0.87
VCX3BQ9H321 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.51■□□□□ 0.87
VCX3BQ9H321 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
VCX3BQ9H321 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
VCX3BQ9H321 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
VCX3BQ9H321 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
VCX3BQ9H321 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.51■□□□□ 0.87
VCX3BQ9H321 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
VCX3BQ9H321 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VCX3BQ9H321 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VCX3BQ9H321 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC20.5■□□□□ 0.87
VCX3BQ9H321 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.5■□□□□ 0.87
VCX3BQ9H321 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
VCX3BQ9H321 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.5■□□□□ 0.87
VCX3BQ9H321 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
VCX3BQ9H321 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
VCX3BQ9H321 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VCX3BQ9H321 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
VCX3BQ9H321 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VCX3BQ9H321 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
VCX3BQ9H321 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VCX3BQ9H321 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VCX3BQ9H321 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.49■□□□□ 0.87
VCX3BQ9H321 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VCX3BQ9H321 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VCX3BQ9H321 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VCX3BQ9H321 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VCX3BQ9H321 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
VCX3BQ9H321 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
VCX3BQ9H321 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
VCX3BQ9H321 MCC-208ENST00000514701 2855 ntTSL 2 BASIC20.48■□□□□ 0.87
VCX3BQ9H321 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC20.48■□□□□ 0.87
VCX3BQ9H321 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VCX3BQ9H321 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.48■□□□□ 0.87
VCX3BQ9H321 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
VCX3BQ9H321 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
VCX3BQ9H321 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VCX3BQ9H321 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VCX3BQ9H321 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VCX3BQ9H321 AL592295.1-201ENST00000400984 884 ntBASIC20.48■□□□□ 0.87
VCX3BQ9H321 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC20.48■□□□□ 0.87
VCX3BQ9H321 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VCX3BQ9H321 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.48■□□□□ 0.87
VCX3BQ9H321 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.48■□□□□ 0.87
VCX3BQ9H321 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
VCX3BQ9H321 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms