Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
TRAV40A0A0B4J280 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
TRAV40A0A0B4J280 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV40A0A0B4J280 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV40A0A0B4J280 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV40A0A0B4J280 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC17.61■□□□□ 0.41
TRAV40A0A0B4J280 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC17.61■□□□□ 0.41
TRAV40A0A0B4J280 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC17.61■□□□□ 0.41
TRAV40A0A0B4J280 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV40A0A0B4J280 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV40A0A0B4J280 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC17.61■□□□□ 0.41
TRAV40A0A0B4J280 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV40A0A0B4J280 AC005224.4-201ENST00000583262 1652 ntBASIC17.61■□□□□ 0.41
TRAV40A0A0B4J280 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
TRAV40A0A0B4J280 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV40A0A0B4J280 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV40A0A0B4J280 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC17.61■□□□□ 0.41
TRAV40A0A0B4J280 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC17.6■□□□□ 0.41
TRAV40A0A0B4J280 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TRAV40A0A0B4J280 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
TRAV40A0A0B4J280 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC17.6■□□□□ 0.41
TRAV40A0A0B4J280 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAV40A0A0B4J280 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
TRAV40A0A0B4J280 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC17.6■□□□□ 0.41
TRAV40A0A0B4J280 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
TRAV40A0A0B4J280 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
TRAV40A0A0B4J280 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC17.6■□□□□ 0.41
TRAV40A0A0B4J280 TESC-206ENST00000541210 936 ntTSL 3 BASIC17.6■□□□□ 0.41
TRAV40A0A0B4J280 VPS53-216ENST00000574029 585 ntTSL 4 BASIC17.6■□□□□ 0.41
TRAV40A0A0B4J280 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC17.6■□□□□ 0.41
TRAV40A0A0B4J280 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAV40A0A0B4J280 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAV40A0A0B4J280 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAV40A0A0B4J280 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TRAV40A0A0B4J280 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV40A0A0B4J280 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV40A0A0B4J280 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV40A0A0B4J280 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV40A0A0B4J280 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV40A0A0B4J280 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
TRAV40A0A0B4J280 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC17.59■□□□□ 0.41
TRAV40A0A0B4J280 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC17.59■□□□□ 0.41
TRAV40A0A0B4J280 AC009237.3-201ENST00000393279 1427 ntBASIC17.59■□□□□ 0.41
TRAV40A0A0B4J280 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC17.59■□□□□ 0.41
TRAV40A0A0B4J280 STX7-201ENST00000367937 1090 ntTSL 5 BASIC17.59■□□□□ 0.41
TRAV40A0A0B4J280 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV40A0A0B4J280 KRT19P1-201ENST00000405746 1186 ntBASIC17.59■□□□□ 0.41
TRAV40A0A0B4J280 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV40A0A0B4J280 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC17.59■□□□□ 0.41
TRAV40A0A0B4J280 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC17.59■□□□□ 0.41
TRAV40A0A0B4J280 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV40A0A0B4J280 CPT2-209ENST00000636935 803 ntTSL 5 BASIC17.59■□□□□ 0.41
TRAV40A0A0B4J280 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV40A0A0B4J280 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
TRAV40A0A0B4J280 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC17.59■□□□□ 0.41
TRAV40A0A0B4J280 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC17.59■□□□□ 0.41
TRAV40A0A0B4J280 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV40A0A0B4J280 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV40A0A0B4J280 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRAV40A0A0B4J280 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRAV40A0A0B4J280 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV40A0A0B4J280 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV40A0A0B4J280 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV40A0A0B4J280 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV40A0A0B4J280 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC17.58■□□□□ 0.4
TRAV40A0A0B4J280 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV40A0A0B4J280 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC17.58■□□□□ 0.4
TRAV40A0A0B4J280 AC079089.2-201ENST00000531211 1277 ntBASIC17.58■□□□□ 0.4
TRAV40A0A0B4J280 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC17.58■□□□□ 0.4
TRAV40A0A0B4J280 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC17.58■□□□□ 0.4
TRAV40A0A0B4J280 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV40A0A0B4J280 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV40A0A0B4J280 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC17.58■□□□□ 0.4
TRAV40A0A0B4J280 PXK-203ENST00000383715 1756 ntTSL 5 BASIC17.58■□□□□ 0.4
TRAV40A0A0B4J280 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
TRAV40A0A0B4J280 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV40A0A0B4J280 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV40A0A0B4J280 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV40A0A0B4J280 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV40A0A0B4J280 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC17.57■□□□□ 0.4
TRAV40A0A0B4J280 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC17.57■□□□□ 0.4
TRAV40A0A0B4J280 AC006015.1-201ENST00000429970 570 ntBASIC17.57■□□□□ 0.4
TRAV40A0A0B4J280 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC17.57■□□□□ 0.4
TRAV40A0A0B4J280 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV40A0A0B4J280 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV40A0A0B4J280 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV40A0A0B4J280 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV40A0A0B4J280 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC17.57■□□□□ 0.4
TRAV40A0A0B4J280 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC17.56■□□□□ 0.4
TRAV40A0A0B4J280 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV40A0A0B4J280 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV40A0A0B4J280 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV40A0A0B4J280 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC17.56■□□□□ 0.4
TRAV40A0A0B4J280 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV40A0A0B4J280 HSCB-202ENST00000398941 955 ntTSL 2 BASIC17.56■□□□□ 0.4
TRAV40A0A0B4J280 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC17.56■□□□□ 0.4
TRAV40A0A0B4J280 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV40A0A0B4J280 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV40A0A0B4J280 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV40A0A0B4J280 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms