Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CXCL1P09341 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CXCL1P09341 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CXCL1P09341 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CXCL1P09341 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC21.15■□□□□ 0.98
CXCL1P09341 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CXCL1P09341 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC21.14■□□□□ 0.97
CXCL1P09341 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CXCL1P09341 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CXCL1P09341 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CXCL1P09341 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CXCL1P09341 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC21.09■□□□□ 0.97
CXCL1P09341 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CXCL1P09341 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CXCL1P09341 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
CXCL1P09341 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CXCL1P09341 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC21.05■□□□□ 0.96
CXCL1P09341 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
CXCL1P09341 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CXCL1P09341 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC21.04■□□□□ 0.96
CXCL1P09341 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
CXCL1P09341 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC21.04■□□□□ 0.96
CXCL1P09341 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CXCL1P09341 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CXCL1P09341 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
CXCL1P09341 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC21.02■□□□□ 0.96
CXCL1P09341 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CXCL1P09341 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CXCL1P09341 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CXCL1P09341 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC21.02■□□□□ 0.96
CXCL1P09341 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CXCL1P09341 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC21.02■□□□□ 0.95
CXCL1P09341 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC21.01■□□□□ 0.95
CXCL1P09341 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC21.01■□□□□ 0.95
CXCL1P09341 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CXCL1P09341 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CXCL1P09341 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CXCL1P09341 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC21■□□□□ 0.95
CXCL1P09341 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
CXCL1P09341 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC20.98■□□□□ 0.95
CXCL1P09341 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC20.98■□□□□ 0.95
CXCL1P09341 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CXCL1P09341 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CXCL1P09341 SHF-207ENST00000560540 2062 ntTSL 5 BASIC20.96■□□□□ 0.95
CXCL1P09341 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
CXCL1P09341 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC20.95■□□□□ 0.94
CXCL1P09341 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC20.95■□□□□ 0.94
CXCL1P09341 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CXCL1P09341 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CXCL1P09341 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CXCL1P09341 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
CXCL1P09341 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CXCL1P09341 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CXCL1P09341 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CXCL1P09341 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CXCL1P09341 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CXCL1P09341 AC142086.6-201ENST00000621154 1765 ntBASIC20.9■□□□□ 0.94
CXCL1P09341 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CXCL1P09341 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CXCL1P09341 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
CXCL1P09341 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CXCL1P09341 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CXCL1P09341 CREM-210ENST00000374721 2020 ntTSL 5 BASIC20.87■□□□□ 0.93
CXCL1P09341 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CXCL1P09341 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CXCL1P09341 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CXCL1P09341 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC20.85■□□□□ 0.93
CXCL1P09341 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CXCL1P09341 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CXCL1P09341 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
CXCL1P09341 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CXCL1P09341 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CXCL1P09341 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CXCL1P09341 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
CXCL1P09341 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CXCL1P09341 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CXCL1P09341 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC20.82■□□□□ 0.92
CXCL1P09341 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CXCL1P09341 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CXCL1P09341 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CXCL1P09341 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CXCL1P09341 AC120057.4-201ENST00000624722 1615 ntBASIC20.8■□□□□ 0.92
CXCL1P09341 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
CXCL1P09341 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CXCL1P09341 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC20.8■□□□□ 0.92
CXCL1P09341 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CXCL1P09341 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CXCL1P09341 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CXCL1P09341 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
CXCL1P09341 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
CXCL1P09341 AL121749.1-202ENST00000609313 2153 ntBASIC20.77■□□□□ 0.92
CXCL1P09341 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CXCL1P09341 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CXCL1P09341 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.91
CXCL1P09341 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
CXCL1P09341 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC20.76■□□□□ 0.91
CXCL1P09341 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC20.76■□□□□ 0.91
CXCL1P09341 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CXCL1P09341 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CXCL1P09341 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms