Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
VPS9D1Q9Y2B5 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VPS9D1Q9Y2B5 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
VPS9D1Q9Y2B5 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS9D1Q9Y2B5 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
VPS9D1Q9Y2B5 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
VPS9D1Q9Y2B5 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS9D1Q9Y2B5 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
VPS9D1Q9Y2B5 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
VPS9D1Q9Y2B5 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS9D1Q9Y2B5 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
VPS9D1Q9Y2B5 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.53■■□□□ 1.04
VPS9D1Q9Y2B5 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS9D1Q9Y2B5 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS9D1Q9Y2B5 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
VPS9D1Q9Y2B5 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC21.53■■□□□ 1.04
VPS9D1Q9Y2B5 AC010525.1-201ENST00000585559 441 ntBASIC21.53■■□□□ 1.04
VPS9D1Q9Y2B5 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS9D1Q9Y2B5 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS9D1Q9Y2B5 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
VPS9D1Q9Y2B5 OR7E47P-201ENST00000546390 1422 ntBASIC21.53■■□□□ 1.04
VPS9D1Q9Y2B5 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
VPS9D1Q9Y2B5 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS9D1Q9Y2B5 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
VPS9D1Q9Y2B5 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
VPS9D1Q9Y2B5 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS9D1Q9Y2B5 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS9D1Q9Y2B5 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS9D1Q9Y2B5 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS9D1Q9Y2B5 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS9D1Q9Y2B5 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
VPS9D1Q9Y2B5 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
VPS9D1Q9Y2B5 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS9D1Q9Y2B5 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS9D1Q9Y2B5 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
VPS9D1Q9Y2B5 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
VPS9D1Q9Y2B5 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS9D1Q9Y2B5 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS9D1Q9Y2B5 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC21.52■■□□□ 1.04
VPS9D1Q9Y2B5 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC21.52■■□□□ 1.04
VPS9D1Q9Y2B5 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC21.52■■□□□ 1.04
VPS9D1Q9Y2B5 LINC00565-201ENST00000562710 2331 ntBASIC21.52■■□□□ 1.04
VPS9D1Q9Y2B5 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS9D1Q9Y2B5 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC21.52■■□□□ 1.04
VPS9D1Q9Y2B5 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS9D1Q9Y2B5 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
VPS9D1Q9Y2B5 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC21.52■■□□□ 1.04
VPS9D1Q9Y2B5 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC21.52■■□□□ 1.04
VPS9D1Q9Y2B5 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.03
VPS9D1Q9Y2B5 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC21.52■■□□□ 1.03
VPS9D1Q9Y2B5 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
VPS9D1Q9Y2B5 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
VPS9D1Q9Y2B5 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
VPS9D1Q9Y2B5 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS9D1Q9Y2B5 OXCT2P1-201ENST00000447263 1535 ntBASIC21.51■■□□□ 1.03
VPS9D1Q9Y2B5 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.51■■□□□ 1.03
VPS9D1Q9Y2B5 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS9D1Q9Y2B5 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC21.51■■□□□ 1.03
VPS9D1Q9Y2B5 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS9D1Q9Y2B5 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
VPS9D1Q9Y2B5 UNC93B3-201ENST00000308076 687 ntBASIC21.51■■□□□ 1.03
VPS9D1Q9Y2B5 SNX3-202ENST00000349379 890 ntTSL 2 BASIC21.51■■□□□ 1.03
VPS9D1Q9Y2B5 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
VPS9D1Q9Y2B5 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS9D1Q9Y2B5 SLC47A1P1-202ENST00000449666 945 ntBASIC21.51■■□□□ 1.03
VPS9D1Q9Y2B5 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
VPS9D1Q9Y2B5 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
VPS9D1Q9Y2B5 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
VPS9D1Q9Y2B5 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
VPS9D1Q9Y2B5 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS9D1Q9Y2B5 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS9D1Q9Y2B5 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS9D1Q9Y2B5 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VPS9D1Q9Y2B5 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC21.5■■□□□ 1.03
VPS9D1Q9Y2B5 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC21.5■■□□□ 1.03
VPS9D1Q9Y2B5 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC21.5■■□□□ 1.03
VPS9D1Q9Y2B5 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC21.5■■□□□ 1.03
VPS9D1Q9Y2B5 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
VPS9D1Q9Y2B5 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
VPS9D1Q9Y2B5 BID-212ENST00000614949 1988 ntTSL 5 BASIC21.5■■□□□ 1.03
VPS9D1Q9Y2B5 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VPS9D1Q9Y2B5 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VPS9D1Q9Y2B5 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.5■■□□□ 1.03
VPS9D1Q9Y2B5 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
VPS9D1Q9Y2B5 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
VPS9D1Q9Y2B5 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS9D1Q9Y2B5 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
VPS9D1Q9Y2B5 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS9D1Q9Y2B5 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
VPS9D1Q9Y2B5 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
VPS9D1Q9Y2B5 BX842568.3-201ENST00000418104 571 ntBASIC21.49■■□□□ 1.03
VPS9D1Q9Y2B5 AL136162.1-201ENST00000607711 1078 ntBASIC21.49■■□□□ 1.03
VPS9D1Q9Y2B5 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS9D1Q9Y2B5 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS9D1Q9Y2B5 AC135279.3-201ENST00000610945 1311 ntBASIC21.49■■□□□ 1.03
VPS9D1Q9Y2B5 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
VPS9D1Q9Y2B5 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC21.48■■□□□ 1.03
VPS9D1Q9Y2B5 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS9D1Q9Y2B5 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
VPS9D1Q9Y2B5 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 131.5 ms