Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 RARRES2P11-201ENST00000635158 484 ntBASIC17.68■□□□□ 0.42
TRAV40A0A0B4J280 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV40A0A0B4J280 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC17.68■□□□□ 0.42
TRAV40A0A0B4J280 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV40A0A0B4J280 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV40A0A0B4J280 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
TRAV40A0A0B4J280 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV40A0A0B4J280 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC17.67■□□□□ 0.42
TRAV40A0A0B4J280 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV40A0A0B4J280 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
TRAV40A0A0B4J280 ASL-203ENST00000380839 1765 ntTSL 5 BASIC17.67■□□□□ 0.42
TRAV40A0A0B4J280 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV40A0A0B4J280 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV40A0A0B4J280 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC17.67■□□□□ 0.42
TRAV40A0A0B4J280 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC17.67■□□□□ 0.42
TRAV40A0A0B4J280 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC17.67■□□□□ 0.42
TRAV40A0A0B4J280 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC17.67■□□□□ 0.42
TRAV40A0A0B4J280 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC17.67■□□□□ 0.42
TRAV40A0A0B4J280 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV40A0A0B4J280 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC17.67■□□□□ 0.42
TRAV40A0A0B4J280 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
TRAV40A0A0B4J280 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
TRAV40A0A0B4J280 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV40A0A0B4J280 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV40A0A0B4J280 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
TRAV40A0A0B4J280 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC17.66■□□□□ 0.42
TRAV40A0A0B4J280 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
TRAV40A0A0B4J280 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC17.66■□□□□ 0.42
TRAV40A0A0B4J280 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC17.66■□□□□ 0.42
TRAV40A0A0B4J280 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC17.66■□□□□ 0.42
TRAV40A0A0B4J280 AC016769.1-201ENST00000409132 1010 ntBASIC17.66■□□□□ 0.42
TRAV40A0A0B4J280 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV40A0A0B4J280 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
TRAV40A0A0B4J280 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC17.66■□□□□ 0.42
TRAV40A0A0B4J280 KRT18P61-201ENST00000585825 1298 ntBASIC17.66■□□□□ 0.42
TRAV40A0A0B4J280 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV40A0A0B4J280 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC17.66■□□□□ 0.42
TRAV40A0A0B4J280 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
TRAV40A0A0B4J280 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV40A0A0B4J280 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV40A0A0B4J280 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAV40A0A0B4J280 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAV40A0A0B4J280 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
TRAV40A0A0B4J280 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC17.65■□□□□ 0.42
TRAV40A0A0B4J280 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC17.65■□□□□ 0.42
TRAV40A0A0B4J280 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAV40A0A0B4J280 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
TRAV40A0A0B4J280 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAV40A0A0B4J280 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC17.65■□□□□ 0.42
TRAV40A0A0B4J280 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC17.65■□□□□ 0.42
TRAV40A0A0B4J280 AC079140.4-201ENST00000507448 529 ntBASIC17.65■□□□□ 0.42
TRAV40A0A0B4J280 DLX3-202ENST00000512495 834 ntTSL 2 BASIC17.65■□□□□ 0.42
TRAV40A0A0B4J280 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC17.65■□□□□ 0.42
TRAV40A0A0B4J280 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC17.65■□□□□ 0.42
TRAV40A0A0B4J280 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC17.65■□□□□ 0.42
TRAV40A0A0B4J280 AC137761.2-201ENST00000561729 223 ntBASIC17.65■□□□□ 0.42
TRAV40A0A0B4J280 AC145350.3-201ENST00000569033 163 ntBASIC17.65■□□□□ 0.42
TRAV40A0A0B4J280 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAV40A0A0B4J280 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAV40A0A0B4J280 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAV40A0A0B4J280 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
TRAV40A0A0B4J280 AC004854.2-201ENST00000608450 1441 ntBASIC17.64■□□□□ 0.42
TRAV40A0A0B4J280 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC17.64■□□□□ 0.41
TRAV40A0A0B4J280 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV40A0A0B4J280 ME3-201ENST00000323418 1068 ntTSL 5 BASIC17.64■□□□□ 0.41
TRAV40A0A0B4J280 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV40A0A0B4J280 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC17.64■□□□□ 0.41
TRAV40A0A0B4J280 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV40A0A0B4J280 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC17.64■□□□□ 0.41
TRAV40A0A0B4J280 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC17.64■□□□□ 0.41
TRAV40A0A0B4J280 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC17.64■□□□□ 0.41
TRAV40A0A0B4J280 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC17.64■□□□□ 0.41
TRAV40A0A0B4J280 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV40A0A0B4J280 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV40A0A0B4J280 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV40A0A0B4J280 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV40A0A0B4J280 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV40A0A0B4J280 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV40A0A0B4J280 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV40A0A0B4J280 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC17.63■□□□□ 0.41
TRAV40A0A0B4J280 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV40A0A0B4J280 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV40A0A0B4J280 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
TRAV40A0A0B4J280 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV40A0A0B4J280 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV40A0A0B4J280 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV40A0A0B4J280 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV40A0A0B4J280 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC17.62■□□□□ 0.41
TRAV40A0A0B4J280 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV40A0A0B4J280 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV40A0A0B4J280 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV40A0A0B4J280 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV40A0A0B4J280 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV40A0A0B4J280 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC17.62■□□□□ 0.41
TRAV40A0A0B4J280 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC17.62■□□□□ 0.41
TRAV40A0A0B4J280 DBI-210ENST00000542275 757 ntTSL 5 BASIC17.62■□□□□ 0.41
TRAV40A0A0B4J280 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC17.62■□□□□ 0.41
TRAV40A0A0B4J280 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV40A0A0B4J280 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV40A0A0B4J280 AP004607.4-201ENST00000530158 1459 ntBASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 129 ms