Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 DUX4L6-201ENST00000626483 1275 ntBASIC25■■□□□ 1.59
PCDHA1Q9Y5I3 DUX4L1-201ENST00000627662 1275 ntBASIC25■■□□□ 1.59
PCDHA1Q9Y5I3 DUX4L8-201ENST00000629013 1275 ntBASIC25■■□□□ 1.59
PCDHA1Q9Y5I3 DUX4L3-201ENST00000630187 1275 ntBASIC25■■□□□ 1.59
PCDHA1Q9Y5I3 DUX4L7-201ENST00000630678 1275 ntBASIC25■■□□□ 1.59
PCDHA1Q9Y5I3 DUX4L5-201ENST00000630834 1275 ntBASIC25■■□□□ 1.59
PCDHA1Q9Y5I3 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC25■■□□□ 1.59
PCDHA1Q9Y5I3 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
PCDHA1Q9Y5I3 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC25■■□□□ 1.59
PCDHA1Q9Y5I3 AC087742.1-201ENST00000575880 1738 ntBASIC25■■□□□ 1.59
PCDHA1Q9Y5I3 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
PCDHA1Q9Y5I3 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC25■■□□□ 1.59
PCDHA1Q9Y5I3 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
PCDHA1Q9Y5I3 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
PCDHA1Q9Y5I3 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC24.99■■□□□ 1.59
PCDHA1Q9Y5I3 AC079089.2-201ENST00000531211 1277 ntBASIC24.99■■□□□ 1.59
PCDHA1Q9Y5I3 TERF1P2-201ENST00000583350 1212 ntBASIC24.99■■□□□ 1.59
PCDHA1Q9Y5I3 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
PCDHA1Q9Y5I3 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC24.98■■□□□ 1.59
PCDHA1Q9Y5I3 TPRG1LP1-201ENST00000598702 760 ntBASIC24.98■■□□□ 1.59
PCDHA1Q9Y5I3 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC24.98■■□□□ 1.59
PCDHA1Q9Y5I3 ASL-203ENST00000380839 1765 ntTSL 5 BASIC24.98■■□□□ 1.59
PCDHA1Q9Y5I3 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
PCDHA1Q9Y5I3 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
PCDHA1Q9Y5I3 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
PCDHA1Q9Y5I3 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC24.97■■□□□ 1.59
PCDHA1Q9Y5I3 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC24.97■■□□□ 1.59
PCDHA1Q9Y5I3 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC24.97■■□□□ 1.59
PCDHA1Q9Y5I3 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC24.97■■□□□ 1.59
PCDHA1Q9Y5I3 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
PCDHA1Q9Y5I3 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC24.97■■□□□ 1.59
PCDHA1Q9Y5I3 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
PCDHA1Q9Y5I3 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
PCDHA1Q9Y5I3 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
PCDHA1Q9Y5I3 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
PCDHA1Q9Y5I3 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC24.96■■□□□ 1.59
PCDHA1Q9Y5I3 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC24.96■■□□□ 1.59
PCDHA1Q9Y5I3 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
PCDHA1Q9Y5I3 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC24.96■■□□□ 1.59
PCDHA1Q9Y5I3 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
PCDHA1Q9Y5I3 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
PCDHA1Q9Y5I3 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC24.96■■□□□ 1.59
PCDHA1Q9Y5I3 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC24.96■■□□□ 1.59
PCDHA1Q9Y5I3 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC24.96■■□□□ 1.59
PCDHA1Q9Y5I3 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC24.96■■□□□ 1.59
PCDHA1Q9Y5I3 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
PCDHA1Q9Y5I3 KRT18P14-201ENST00000534205 1250 ntBASIC24.96■■□□□ 1.59
PCDHA1Q9Y5I3 ME2-208ENST00000638937 2471 ntTSL 5 BASIC24.96■■□□□ 1.59
PCDHA1Q9Y5I3 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
PCDHA1Q9Y5I3 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC24.96■■□□□ 1.59
PCDHA1Q9Y5I3 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
PCDHA1Q9Y5I3 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
PCDHA1Q9Y5I3 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC24.95■■□□□ 1.59
PCDHA1Q9Y5I3 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC24.95■■□□□ 1.58
PCDHA1Q9Y5I3 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC24.95■■□□□ 1.58
PCDHA1Q9Y5I3 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
PCDHA1Q9Y5I3 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
PCDHA1Q9Y5I3 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
PCDHA1Q9Y5I3 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
PCDHA1Q9Y5I3 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC24.95■■□□□ 1.58
PCDHA1Q9Y5I3 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
PCDHA1Q9Y5I3 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
PCDHA1Q9Y5I3 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC24.94■■□□□ 1.58
PCDHA1Q9Y5I3 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC24.94■■□□□ 1.58
PCDHA1Q9Y5I3 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC24.94■■□□□ 1.58
PCDHA1Q9Y5I3 PARL-206ENST00000435888 1098 ntTSL 5 BASIC24.94■■□□□ 1.58
PCDHA1Q9Y5I3 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
PCDHA1Q9Y5I3 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
PCDHA1Q9Y5I3 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
PCDHA1Q9Y5I3 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC24.93■■□□□ 1.58
PCDHA1Q9Y5I3 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
PCDHA1Q9Y5I3 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
PCDHA1Q9Y5I3 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
PCDHA1Q9Y5I3 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
PCDHA1Q9Y5I3 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC24.93■■□□□ 1.58
PCDHA1Q9Y5I3 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC24.93■■□□□ 1.58
PCDHA1Q9Y5I3 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC24.93■■□□□ 1.58
PCDHA1Q9Y5I3 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC24.93■■□□□ 1.58
PCDHA1Q9Y5I3 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
PCDHA1Q9Y5I3 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC24.93■■□□□ 1.58
PCDHA1Q9Y5I3 AC104564.3-201ENST00000582367 638 ntBASIC24.93■■□□□ 1.58
PCDHA1Q9Y5I3 AC092666.2-201ENST00000613287 246 ntBASIC24.93■■□□□ 1.58
PCDHA1Q9Y5I3 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
PCDHA1Q9Y5I3 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
PCDHA1Q9Y5I3 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC24.92■■□□□ 1.58
PCDHA1Q9Y5I3 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC24.92■■□□□ 1.58
PCDHA1Q9Y5I3 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
PCDHA1Q9Y5I3 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC24.92■■□□□ 1.58
PCDHA1Q9Y5I3 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
PCDHA1Q9Y5I3 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
PCDHA1Q9Y5I3 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC24.92■■□□□ 1.58
PCDHA1Q9Y5I3 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC24.92■■□□□ 1.58
PCDHA1Q9Y5I3 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC24.92■■□□□ 1.58
PCDHA1Q9Y5I3 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC24.91■■□□□ 1.58
PCDHA1Q9Y5I3 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC24.91■■□□□ 1.58
PCDHA1Q9Y5I3 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC24.91■■□□□ 1.58
PCDHA1Q9Y5I3 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC24.91■■□□□ 1.58
PCDHA1Q9Y5I3 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC24.91■■□□□ 1.58
PCDHA1Q9Y5I3 AC137767.1-201ENST00000602918 1920 ntBASIC24.91■■□□□ 1.58
PCDHA1Q9Y5I3 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms