Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MMP28Q9H239 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
MMP28Q9H239 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
MMP28Q9H239 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
MMP28Q9H239 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
MMP28Q9H239 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
MMP28Q9H239 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
MMP28Q9H239 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
MMP28Q9H239 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
MMP28Q9H239 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC19.08■□□□□ 0.64
MMP28Q9H239 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
MMP28Q9H239 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.08■□□□□ 0.64
MMP28Q9H239 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
MMP28Q9H239 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC19.08■□□□□ 0.64
MMP28Q9H239 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
MMP28Q9H239 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC19.07■□□□□ 0.64
MMP28Q9H239 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
MMP28Q9H239 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
MMP28Q9H239 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
MMP28Q9H239 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC19.07■□□□□ 0.64
MMP28Q9H239 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC19.07■□□□□ 0.64
MMP28Q9H239 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
MMP28Q9H239 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC19.07■□□□□ 0.64
MMP28Q9H239 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
MMP28Q9H239 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
MMP28Q9H239 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC19.06■□□□□ 0.64
MMP28Q9H239 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
MMP28Q9H239 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
MMP28Q9H239 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.06■□□□□ 0.64
MMP28Q9H239 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
MMP28Q9H239 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
MMP28Q9H239 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
MMP28Q9H239 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
MMP28Q9H239 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
MMP28Q9H239 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
MMP28Q9H239 AC090877.2-201ENST00000558441 1738 ntBASIC19.05■□□□□ 0.64
MMP28Q9H239 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
MMP28Q9H239 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MMP28Q9H239 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MMP28Q9H239 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
MMP28Q9H239 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MMP28Q9H239 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MMP28Q9H239 AL451085.2-201ENST00000605085 799 ntBASIC19.05■□□□□ 0.64
MMP28Q9H239 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
MMP28Q9H239 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC19.05■□□□□ 0.64
MMP28Q9H239 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
MMP28Q9H239 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MMP28Q9H239 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MMP28Q9H239 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
MMP28Q9H239 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC19.04■□□□□ 0.64
MMP28Q9H239 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
MMP28Q9H239 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
MMP28Q9H239 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
MMP28Q9H239 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
MMP28Q9H239 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
MMP28Q9H239 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
MMP28Q9H239 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
MMP28Q9H239 KRT8P33-201ENST00000508125 1423 ntBASIC19.04■□□□□ 0.64
MMP28Q9H239 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC19.04■□□□□ 0.64
MMP28Q9H239 AC011551.1-201ENST00000614101 683 ntBASIC19.04■□□□□ 0.64
MMP28Q9H239 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC19.04■□□□□ 0.64
MMP28Q9H239 AL035685.1-201ENST00000636663 812 ntBASIC19.04■□□□□ 0.64
MMP28Q9H239 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC19.04■□□□□ 0.64
MMP28Q9H239 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC19.04■□□□□ 0.64
MMP28Q9H239 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
MMP28Q9H239 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
MMP28Q9H239 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
MMP28Q9H239 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
MMP28Q9H239 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
MMP28Q9H239 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
MMP28Q9H239 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
MMP28Q9H239 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
MMP28Q9H239 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
MMP28Q9H239 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC19.03■□□□□ 0.64
MMP28Q9H239 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
MMP28Q9H239 MIR4508-201ENST00000584178 70 ntBASIC19.03■□□□□ 0.64
MMP28Q9H239 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
MMP28Q9H239 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC19.03■□□□□ 0.64
MMP28Q9H239 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
MMP28Q9H239 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC19.03■□□□□ 0.64
MMP28Q9H239 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
MMP28Q9H239 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
MMP28Q9H239 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
MMP28Q9H239 CD37-213ENST00000598095 1598 ntTSL 2 BASIC19.02■□□□□ 0.64
MMP28Q9H239 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC19.02■□□□□ 0.64
MMP28Q9H239 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
MMP28Q9H239 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC19.02■□□□□ 0.64
MMP28Q9H239 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
MMP28Q9H239 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC19.02■□□□□ 0.64
MMP28Q9H239 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
MMP28Q9H239 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.63
MMP28Q9H239 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
MMP28Q9H239 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
MMP28Q9H239 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
MMP28Q9H239 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
MMP28Q9H239 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
MMP28Q9H239 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
MMP28Q9H239 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.01■□□□□ 0.63
MMP28Q9H239 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.01■□□□□ 0.63
MMP28Q9H239 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms