Protein–RNA interactions for Protein: Q99743

NPAS2, Neuronal PAS domain-containing protein 2, humanhuman

Predictions only

Length 824 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS2Q99743 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.22■□□□□ 0.99
NPAS2Q99743 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC21.22■□□□□ 0.99
NPAS2Q99743 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.22■□□□□ 0.99
NPAS2Q99743 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC21.22■□□□□ 0.99
NPAS2Q99743 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
NPAS2Q99743 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NPAS2Q99743 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
NPAS2Q99743 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPAS2Q99743 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC21.21■□□□□ 0.99
NPAS2Q99743 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NPAS2Q99743 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NPAS2Q99743 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPAS2Q99743 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPAS2Q99743 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPAS2Q99743 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.99
NPAS2Q99743 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
NPAS2Q99743 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC21.2■□□□□ 0.98
NPAS2Q99743 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.2■□□□□ 0.98
NPAS2Q99743 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
NPAS2Q99743 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.2■□□□□ 0.98
NPAS2Q99743 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.2■□□□□ 0.98
NPAS2Q99743 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC21.2■□□□□ 0.98
NPAS2Q99743 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
NPAS2Q99743 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NPAS2Q99743 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NPAS2Q99743 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NPAS2Q99743 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NPAS2Q99743 AC019069.1-201ENST00000610008 1333 ntBASIC21.2■□□□□ 0.98
NPAS2Q99743 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NPAS2Q99743 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC21.2■□□□□ 0.98
NPAS2Q99743 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.19■□□□□ 0.98
NPAS2Q99743 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
NPAS2Q99743 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC21.19■□□□□ 0.98
NPAS2Q99743 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPAS2Q99743 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
NPAS2Q99743 NALT1-201ENST00000429224 738 ntTSL 5 BASIC21.19■□□□□ 0.98
NPAS2Q99743 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC21.19■□□□□ 0.98
NPAS2Q99743 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.19■□□□□ 0.98
NPAS2Q99743 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
NPAS2Q99743 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPAS2Q99743 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPAS2Q99743 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPAS2Q99743 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NPAS2Q99743 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPAS2Q99743 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.18■□□□□ 0.98
NPAS2Q99743 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NPAS2Q99743 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.18■□□□□ 0.98
NPAS2Q99743 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NPAS2Q99743 AC110285.6-201ENST00000617652 491 ntBASIC21.18■□□□□ 0.98
NPAS2Q99743 AC005703.6-201ENST00000623265 1329 ntBASIC21.18■□□□□ 0.98
NPAS2Q99743 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.18■□□□□ 0.98
NPAS2Q99743 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.18■□□□□ 0.98
NPAS2Q99743 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NPAS2Q99743 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPAS2Q99743 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPAS2Q99743 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPAS2Q99743 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPAS2Q99743 FAM99A-202ENST00000538190 1989 ntBASIC21.17■□□□□ 0.98
NPAS2Q99743 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NPAS2Q99743 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPAS2Q99743 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NPAS2Q99743 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPAS2Q99743 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPAS2Q99743 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC21.17■□□□□ 0.98
NPAS2Q99743 AL139246.5-201ENST00000606645 996 ntBASIC21.17■□□□□ 0.98
NPAS2Q99743 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.17■□□□□ 0.98
NPAS2Q99743 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPAS2Q99743 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
NPAS2Q99743 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPAS2Q99743 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPAS2Q99743 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NPAS2Q99743 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPAS2Q99743 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NPAS2Q99743 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC21.16■□□□□ 0.98
NPAS2Q99743 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPAS2Q99743 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.16■□□□□ 0.98
NPAS2Q99743 MIR638-201ENST00000385237 100 ntBASIC21.16■□□□□ 0.98
NPAS2Q99743 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC21.16■□□□□ 0.98
NPAS2Q99743 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC21.16■□□□□ 0.98
NPAS2Q99743 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
NPAS2Q99743 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.16■□□□□ 0.98
NPAS2Q99743 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NPAS2Q99743 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC21.16■□□□□ 0.98
NPAS2Q99743 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPAS2Q99743 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NPAS2Q99743 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPAS2Q99743 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPAS2Q99743 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPAS2Q99743 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPAS2Q99743 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
NPAS2Q99743 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPAS2Q99743 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
NPAS2Q99743 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPAS2Q99743 AC096631.2-201ENST00000436136 790 ntBASIC21.15■□□□□ 0.98
NPAS2Q99743 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPAS2Q99743 AC010542.4-201ENST00000563151 1910 ntBASIC21.15■□□□□ 0.98
NPAS2Q99743 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.15■□□□□ 0.98
NPAS2Q99743 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.14■□□□□ 0.98
NPAS2Q99743 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
NPAS2Q99743 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms