Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
LSM1O15116 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LSM1O15116 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
LSM1O15116 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.96■□□□□ 0.95
LSM1O15116 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.96■□□□□ 0.95
LSM1O15116 AL117332.1-201ENST00000622628 974 ntBASIC20.96■□□□□ 0.95
LSM1O15116 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LSM1O15116 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
LSM1O15116 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.96■□□□□ 0.95
LSM1O15116 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
LSM1O15116 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
LSM1O15116 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
LSM1O15116 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
LSM1O15116 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
LSM1O15116 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LSM1O15116 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LSM1O15116 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
LSM1O15116 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC20.95■□□□□ 0.94
LSM1O15116 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LSM1O15116 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LSM1O15116 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.95■□□□□ 0.94
LSM1O15116 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.95■□□□□ 0.94
LSM1O15116 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
LSM1O15116 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LSM1O15116 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LSM1O15116 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LSM1O15116 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LSM1O15116 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LSM1O15116 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.95■□□□□ 0.94
LSM1O15116 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LSM1O15116 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LSM1O15116 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LSM1O15116 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
LSM1O15116 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.94■□□□□ 0.94
LSM1O15116 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
LSM1O15116 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.94■□□□□ 0.94
LSM1O15116 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LSM1O15116 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LSM1O15116 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.94■□□□□ 0.94
LSM1O15116 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.94■□□□□ 0.94
LSM1O15116 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.94■□□□□ 0.94
LSM1O15116 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LSM1O15116 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
LSM1O15116 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LSM1O15116 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
LSM1O15116 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.94■□□□□ 0.94
LSM1O15116 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
LSM1O15116 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.94■□□□□ 0.94
LSM1O15116 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
LSM1O15116 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LSM1O15116 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LSM1O15116 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
LSM1O15116 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LSM1O15116 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LSM1O15116 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC20.93■□□□□ 0.94
LSM1O15116 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LSM1O15116 AL137060.1-201ENST00000618151 2648 ntBASIC20.93■□□□□ 0.94
LSM1O15116 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LSM1O15116 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.93■□□□□ 0.94
LSM1O15116 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
LSM1O15116 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LSM1O15116 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
LSM1O15116 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.92■□□□□ 0.94
LSM1O15116 FAM99A-202ENST00000538190 1989 ntBASIC20.92■□□□□ 0.94
LSM1O15116 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LSM1O15116 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.92■□□□□ 0.94
LSM1O15116 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
LSM1O15116 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LSM1O15116 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
LSM1O15116 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LSM1O15116 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LSM1O15116 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LSM1O15116 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.92■□□□□ 0.94
LSM1O15116 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LSM1O15116 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
LSM1O15116 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
LSM1O15116 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
LSM1O15116 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
LSM1O15116 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LSM1O15116 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
LSM1O15116 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
LSM1O15116 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.91■□□□□ 0.94
LSM1O15116 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.91■□□□□ 0.94
LSM1O15116 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.91■□□□□ 0.94
LSM1O15116 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC20.91■□□□□ 0.94
LSM1O15116 AC241377.3-202ENST00000626088 1088 ntBASIC20.91■□□□□ 0.94
LSM1O15116 AC241585.3-202ENST00000628937 1088 ntBASIC20.91■□□□□ 0.94
LSM1O15116 AC245100.8-202ENST00000629247 1058 ntBASIC20.91■□□□□ 0.94
LSM1O15116 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
LSM1O15116 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.91■□□□□ 0.94
LSM1O15116 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LSM1O15116 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LSM1O15116 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC20.9■□□□□ 0.94
LSM1O15116 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC20.9■□□□□ 0.94
LSM1O15116 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC20.9■□□□□ 0.94
LSM1O15116 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LSM1O15116 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC20.9■□□□□ 0.94
LSM1O15116 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
LSM1O15116 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
LSM1O15116 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms